LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan6g0728	ATGGATGAAGATATCAGCAATTCTTTGTTAAGGAGAGCAAAATTCTCTCACACGGTATGTCACCGGCTGGATTTTCCCAGATCGGGGTCTCTTCCGAATGGGAATTCAGGTCTGAAATATAGGCCATCAGAAGCAACTCCTCATAATCTAAACCCTGTTGCTAAGGTTTCAGAGGTTCAGAAAAATATCATAACAAACAATCAGAGATCTTTATCCCCTTTGCCAGAAACCATTGTTCCTCAAATCTTTAAGGAAGCCAGACTTGAACGGAAGAGGTTCTCAACACCAGGTCCGCAGAGGAAAAGGCAGGATAAGAAAATTATGGGCAAGTTACTGACCAAGGATTCTCAAGAAATTAAGGTATCAAATCCAAAAGCGCCTATTAAGCACCTTGCTTCAATGAAACTAGGAGACAAGTCAATGCACCACATGGAATCGGGATGGACAAAGTATTTTGATCATGGTGGAGGAAGGGTTACTGCTGTTGAAACAGCTGAAGAATGGACTGTTGATCTCTCTGAGCTGTTTCTGGGTCTTAGGTTTGCTTATGGCGCTCACAGTCGACTTTACCATGGTACGTATAAAGAGGAACCTGTTGCTGTCAAAATTATCAGGGTACCAGATGATGATGAAAACCATATATTGGCTTCACGATTAGAGAAACAGTTCATCAGAGAAGTCACACTTTTATCTCGCCTCCACCATCCAAATGTTTTAAAGTTCATAGCAGCTTGCAGAAAGCCTTCTGTTTATTGTGTTATCACAGAATATTTATCAGGAGGTTCTTTGAGATCATACTTGCATAATTTGGAGAGAGAAACTGTTTCTCTACAAAAGCTAATTGTTTTTGCGCTGGATATTGCTCGTGGAATGGAATATATACACTCTCAAGGTGTCGTTCATCGAGACCTTAAACCTGAGAATGTTCTTATTAATGATGACGGTCACCTTATTATAGCTGATTTTGGCATTGCCTGTGAGGAAGCATACTGCGGCTTATTAGCGGATGACCCTGGTACCTACCGTTGGATGGCACCAGAGATGATCAAGCGTAAATCCCATGGGAGGAAGGTTGATGTTTACAGTTTTGGTCTTATCTTATGGGAAATGTTGACTGGAACAACACCGTATGAGGATATGACTCCCATACAAGCTGCTTTTGCCGTAGTAAATAAGAATTCCAGGCCTGTTATTCCTTCAAGTTGTCCACCTGCTATGCGATCTTTAATTGACCGATGTTGGTCCTTGCATCCAGATAAGAGGCCAGAGTTCTGGCAGATTGTTAAGGTATTAGAGCAATTTGAATCTTCACTGGCTCGTGATGGAACCCTAACTATGACGCAAAACTTTTTAAGCCAAGATAATAAAAGTGGTCCTCTTCATTGGATGCAAAAGCGTGGTTCTGTGCATCAACCCAGTAATAATTCTGTGCATCAACCCAGTAATAATTCTGTGCATCAACACAGTGGTTTTGTGTCTAACCCAAAATTCGCGTGA	1497	0.4148	MDEDISNSLLRRAKFSHTVCHRLDFPRSGSLPNGNSGLKYRPSEATPHNLNPVAKVSEVQKNIITNNQRSLSPLPETIVPQIFKEARLERKRFSTPGPQRKRQDKKIMGKLLTKDSQEIKVSNPKAPIKHLASMKLGDKSMHHMESGWTKYFDHGGGRVTAVETAEEWTVDLSELFLGLRFAYGAHSRLYHGTYKEEPVAVKIIRVPDDDENHILASRLEKQFIREVTLLSRLHHPNVLKFIAACRKPSVYCVITEYLSGGSLRSYLHNLERETVSLQKLIVFALDIARGMEYIHSQGVVHRDLKPENVLINDDGHLIIADFGIACEEAYCGLLADDPGTYRWMAPEMIKRKSHGRKVDVYSFGLILWEMLTGTTPYEDMTPIQAAFAVVNKNSRPVIPSSCPPAMRSLIDRCWSLHPDKRPEFWQIVKVLEQFESSLARDGTLTMTQNFLSQDNKSGPLHWMQKRGSVHQPSNNSVHQPSNNSVHQHSGFVSNPKFA*	499

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan6g0728	498	Pfam	Protein tyrosine and serine/threonine kinase	183	431	IPR001245	GO:0004672\|GO:0006468
	Lan6g0728	498	SMART	serkin_6	175	434	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan6g0728	498	PRINTS	Tyrosine kinase catalytic domain signature	255	268	IPR001245	GO:0004672\|GO:0006468
	Lan6g0728	498	PRINTS	Tyrosine kinase catalytic domain signature	293	311	IPR001245	GO:0004672\|GO:0006468
	Lan6g0728	498	PRINTS	Tyrosine kinase catalytic domain signature	339	349	IPR001245	GO:0004672\|GO:0006468
	Lan6g0728	498	PRINTS	Tyrosine kinase catalytic domain signature	358	380	IPR001245	GO:0004672\|GO:0006468
	Lan6g0728	498	PRINTS	Tyrosine kinase catalytic domain signature	402	424	IPR001245	GO:0004672\|GO:0006468
	Lan6g0728	498	Gene3D	Phosphorylase Kinase; domain 1	163	259	-	-
	Lan6g0728	498	CDD	STKc_MAP3K-like	184	431	-	-
	Lan6g0728	498	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	5	459	-	-
	Lan6g0728	498	ProSiteProfiles	Protein kinase domain profile.	175	435	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan6g0728	498	Gene3D	Transferase(Phosphotransferase) domain 1	260	489	-	-
	Lan6g0728	498	SUPERFAMILY	Protein kinase-like (PK-like)	158	431	IPR011009	-
	Lan6g0728	498	MobiDBLite	consensus disorder prediction	467	491	-	-
	Lan6g0728	498	PANTHER	TYROSINE KINASE FAMILY PROTEIN	5	459	-	-
	Lan6g0728	498	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	299	311	IPR008271	GO:0004672\|GO:0006468
	Lan6g0728	498	MobiDBLite	consensus disorder prediction	455	498	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan6g0728	Lan-Chr6	6626273	6629452	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan6g0728	1	470	MAP Kinase Kinase Kinase	AT5G58950	54.871	0.0	559

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Lan6g0728		PK_Tyr_Ser-Thr	1.2e-61	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan6g0728	-		-	lang:109331738	782.711

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan17g0707	17	6311449	6315338	Lan6g0728	6	6626273	6629452	LSH
	Lan6g0728	6	6626273	6629452	Lan4g0683	4	9317669	9321073	PCT
	Lan6g0728	6	6626273	6629452	Lan19g0931	19	16683393	16686492	PCT
	Lan4g0683	4	9317669	9321073	Lan6g0728	6	6626273	6629452	PCT
	Lan19g0931	19	16683393	16686492	Lan6g0728	6	6626273	6629452	PCT