Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0724 ATGGGTGATAATGTTTTGGATCTCAACCTTCTTGGTGTTGGCGAGTTGGCTTCTCATCATGAAGGCCATACTCTAAGGCCAAGGAACCCTGCACCCTTTTTGTTGAAGACTTATAATTTGTTGGAAGAAGCTGAAGATGATAACAAGAAAATTGTGTCATGGAATGTAGATGGAAAAGGTTTTGTTGTGTGGTCTCCAGCTGAATTCTCAGATCTTACCTTGCCTAGATATTTCAAGCACAACAACTTCTCAAGCTTCATTCGACAATTGAATACCTATGGATTTAAGAAAATATCATCTAAAAGATGGGAATTCAAGCATGAGAAATTTCAGAGGGGTTGCAAGCATTTGCTAGTTGAAATCACAAGGAAAAAGGGTGAGCCAAGTGTTTTTCCTTCATACCTCAAATCATCTTCAGAGGAAAATGGAATGACTAGTTCCATGGAAGTAAACAATAATCAACAAATACTTATGGAGGAGAACAAGAACCTAAAGGAGGAAAGATTGGAGCTGCAAATGCAGATAGCTGAATGCAAAGCAATAGAAATGAAATTGCTTGAGTATCTCTCTCAATTTGTGGACAACCACCAAAATAAAGTTAGGAGATTATGTTAG 615 0.3772 MGDNVLDLNLLGVGELASHHEGHTLRPRNPAPFLLKTYNLLEEAEDDNKKIVSWNVDGKGFVVWSPAEFSDLTLPRYFKHNNFSSFIRQLNTYGFKKISSKRWEFKHEKFQRGCKHLLVEITRKKGEPSVFPSYLKSSSEENGMTSSMEVNNNQQILMEENKNLKEERLELQMQIAECKAIEMKLLEYLSQFVDNHQNKVRRLC* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0724 204 SMART hsfneu3 29 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan6g0724 204 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A-LIKE 24 204 - -
Lan6g0724 204 SUPERFAMILY "Winged helix" DNA-binding domain 28 124 IPR036390 -
Lan6g0724 204 Gene3D - 25 125 IPR036388 -
Lan6g0724 204 Pfam HSF-type DNA-binding 33 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan6g0724 204 Coils Coil 147 181 - -
Lan6g0724 204 ProSitePatterns HSF-type DNA-binding domain signature. 74 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan6g0724 204 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 24 204 IPR027725 -
Lan6g0724 204 PRINTS Heat shock factor (HSF) domain signature 33 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan6g0724 204 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan6g0724 204 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0724 Lan-Chr6 6592759 6595173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0724 30 193 HSF AT5G62020 38.660 2.96e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lan6g0724 HSF_DNA-bind 4.1e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0724 K09419 - gmx:100789792 302.753