Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0710 ATGATGGTGGAGAATGACAACTTTGACTTTTCGGAACTGTTCCCTGTTCTTGATGACGACGGTGATGATGGTGAGACTTGTATTGATTTTCAGATGATTATGAAGCTTATCGATGAGGATTCTGGCCCTGCGGAGGAGCAGTGTAGTCCCATGGCTTCTTCATTAAAAAGTATTTTGCCAGGTGAATCTAGCATCAACGATATGTTTCAGCTTCAAACTGATGCTTCACATAGTTCTATCATTGACAATGATGATGTAAGTTTTGAAGATTTTATCAAAGCCGACCTTGGAGGAGTTTCTGGACATCAGGGAACAGGTGGGAGTCCTTTTGTTGCCGACTCATCTCTTACTTTTTCTCCTGGTGGTATTTATTCTCAACCATGGACAAATGAAGAAATGATGAGAAACATGAAGGCTGAAAACAAGGAATTCTATGGTGATGTGTCATGTGTGAGTAATAGCATCTACTCAAGCACTACCGGGGAGGCGTCTTTTCAGTATAGTCAATTTATGTTAACAGATAATGGGTTTCCATCAATTTTTTCTGATAATGTTATCTTCGAAGACAAGGCATCTGAGCCACTTTCAACTTGTGCTTCACACATGTCATATGGAGGCCAATCACTTTGTGTAAAGGGTGAAAGAGATGAAGTGATTACACCTTACCAAAATAATTTTCACAATAATGATGCCAAGTTCAATGTAGGTCAAGACATGAAACAGTTATGTGGTGCTTTTCCTTCTAAGGAGCATCAGAGTTATGAATGTTTTAAGCCTAAGGACAATTTCACAGTTGCCACATCTTCTATAGCGAGTCAAAAGCAAGATATGGACATATCTTCGCCATGTGCCCAAGCATCAATTGCCAGTGAGAAACAGTTTGGTTGTGTTAAGAGAGAAGGAGGGGGCAAAATGATTCAACATAAACATATTGATTCTCATCTTTCAAAAGGTAGTGCTGAAAATATCCATGTTGAGGATGACTCTGGTGTTTGCATTATTGAAGACATTAGTCACCCTCCGCCTACTCAGAAATCTGTAGACACTGGGAATTCCCTCGGTATATCCCATTCTTCTAGATATGTTGATTCCCGACCATGCATAGTTCGAAGCACAAGGCTGAAGGCATGTGATGAGCGAAATGTATTACGAGTTGCACTCCAGGATCTATCTCAGCCAAAGTCCGAAGTTAGCCCACCAGATGGATTGCTGGCAGTTCCTCTTTTAAGACACCAGAGAATTGCTTTATCATGGATGATTCAGAAAGAAACATCAAGCATATATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTCGGAAAAACTCTGTCCACTATTTCCTTAATATTAACAGAAAAACCACCAACGCTTAGTGTGTGCCCCAATGCTCCAAAAGGTGAATTTGAAACTTTGAATCTGGATGCGGATGATGACGTACTTCCTCTGAATGGAGTGAATAAAGAATGTAAATATCCAGTCAAGAGTACGAATATGTTGATGCAGGCAAAAGGAAGGCCATCTGCTGGAACCCTTGTTGTTTGTCCCACCAGTGTCCTGCGCCAATGGGCAGAGGAGTTGCGTAATAAGGTAACCAGGCAAGCAAATCTCTCTGTGCTTGTGTACCATGGAAGCAATCGAACAAAAGATCCTTATGAGGTGGCCAAGTATGATGTTGTTTTGACAACTTACTCAATTGTCGGCATAGAAGTCCCAAAGCAGCCTCTAGTTGACAAAGATGAAGAAAAGGGAGATTTTGAAGATCACACTGCTTCGGGTAGGAAACGGAAAGTGCCTTCTAATTCTAATAGAAATGGCAAAAAGGGAAGGAGCAACACAGTGCTTGAGGCTGTTGCACTCCCTCTTGCAAAGGTGGCATGGTTTAGGGTTGTCCTGGATGAGGCGCAGAGTATAAAGAATTATAGAACTCAAGTTGCAAGGGCCTGTTGGGGCCTTCGTGCTAAGCGTAGATGGTGCTTGTCAGGGACTCCCATCCAGAATGCAATTGATGATCTATACAGCTATTTTAGATTTCTTAGATATGACCCTTATGCAGTCCATTCATCATTCTGTTTTATGATTAAGAACCCAATTAACAGGAATCCAAAAAAAGGATATAGAAAGCTACAAGCCGTCCTGAAGACAATAATGTTACGTCGGACCAAAGGCACACTTCTTGATGGGAAACCTATTATTTCCTTGCCTCCTAAGCATGTAAAGCTGAAAAAGGTTGATTTTTCACGGGAGGAACGTGATTTCTATTCCAGACTAGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTAATGCTGGAACTGTCAAACAAAATTACGTCAATATTTTGCTTATGCTTCTGCGCCTCAGACAAGCTTGTGATCACCCTCTGCTTGTCAAGCATTACAATTCCGACTCTCTATGGAGATCTTCGGCTGAGTTGGCGAAGAAGATTCCTCAGGAAAAACAAATATCACTTCTGAAATGCTTAGAGGCTTCGTTGGCCCTCTGTGGCATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCTGTCTGTGGCCATGTTTTCTGCAACCAGTGCATTTGTGAACATTTTAACGGTGATGACAATCAGTGCCCCACTACAAATTGCAAAACTGGACTAAATACGTCTAATGTGTTTTCAAAAGATACATTGAAAAGTTGTCTTTCTGAGCAGGGTTGTGATAATTTGCCTGGTTTCTTTGGTTCTGAAGTTGAGGAATCTGAGCCATGGTTTCAGAGTCAGCCATATGATTCTTCGAAGATTAAGGCTGCACTTGAGGTGTTGCAGTCATTGTGTAAGCCACAAAGCTATACATCAAAAAGTGTTCCGGTACATAGCACTGTCGGGGAAAATAGTGACTGCTCTTCTGATTCTAACAAAGGGAAATCCTTCAAGAACTTTCCTGAGAATCACAATTTGTCTGGTAATAGAAGCTCTAATGATTCAGTTACCGCTTTAGGGGAGAAGGCATTAGTGTTTTCTCAGTGGTCGAGGATGCTAGATTTGCTTGAAGAACATCTTAAGAAATCTTCAATTCAGTATAGAAGGCTTGACGGAACAATGTCAGTTGCTGCAAGAGATAAGGCTGTTAAAGACTTTAACACTCTCCCTGAGGTATCAGTTATGATTATGTCATTGAAAGCTGCCAGTCTTGGTCTAAATATGGTTGCAGCATGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGATCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTGACTGTTTTGCGGTTAACTGTGAGAGATACAATTGAAGATCGTATTTTAGCTCTACAGCAAAGGAAGCGAAAGATGGTTGCTTCTGCATTTGGGGAGAATGGAAATGGTAGTACTAAGAGTCGCCTTACAGTGGATGATTTAAAATACTTATTCATGATGTGA 3450 0.413 MMVENDNFDFSELFPVLDDDGDDGETCIDFQMIMKLIDEDSGPAEEQCSPMASSLKSILPGESSINDMFQLQTDASHSSIIDNDDVSFEDFIKADLGGVSGHQGTGGSPFVADSSLTFSPGGIYSQPWTNEEMMRNMKAENKEFYGDVSCVSNSIYSSTTGEASFQYSQFMLTDNGFPSIFSDNVIFEDKASEPLSTCASHMSYGGQSLCVKGERDEVITPYQNNFHNNDAKFNVGQDMKQLCGAFPSKEHQSYECFKPKDNFTVATSSIASQKQDMDISSPCAQASIASEKQFGCVKREGGGKMIQHKHIDSHLSKGSAENIHVEDDSGVCIIEDISHPPPTQKSVDTGNSLGISHSSRYVDSRPCIVRSTRLKACDERNVLRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMIQKETSSIYCSGGILADDQGLGKTLSTISLILTEKPPTLSVCPNAPKGEFETLNLDADDDVLPLNGVNKECKYPVKSTNMLMQAKGRPSAGTLVVCPTSVLRQWAEELRNKVTRQANLSVLVYHGSNRTKDPYEVAKYDVVLTTYSIVGIEVPKQPLVDKDEEKGDFEDHTASGRKRKVPSNSNRNGKKGRSNTVLEAVALPLAKVAWFRVVLDEAQSIKNYRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVHSSFCFMIKNPINRNPKKGYRKLQAVLKTIMLRRTKGTLLDGKPIISLPPKHVKLKKVDFSREERDFYSRLEADSRAQFQEYANAGTVKQNYVNILLMLLRLRQACDHPLLVKHYNSDSLWRSSAELAKKIPQEKQISLLKCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHFNGDDNQCPTTNCKTGLNTSNVFSKDTLKSCLSEQGCDNLPGFFGSEVEESEPWFQSQPYDSSKIKAALEVLQSLCKPQSYTSKSVPVHSTVGENSDCSSDSNKGKSFKNFPENHNLSGNRSSNDSVTALGEKALVFSQWSRMLDLLEEHLKKSSIQYRRLDGTMSVAARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTIEDRILALQQRKRKMVASAFGENGNGSTKSRLTVDDLKYLFMM* 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0710 1149 Pfam Helicase conserved C-terminal domain 994 1091 IPR001650 -
Lan6g0710 1149 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 223 1148 - -
Lan6g0710 1149 SMART ultradead3 404 701 IPR014001 -
Lan6g0710 1149 MobiDBLite consensus disorder prediction 945 988 - -
Lan6g0710 1149 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 985 1144 IPR001650 -
Lan6g0710 1149 Gene3D - 494 582 IPR038718 -
Lan6g0710 1149 Gene3D - 609 721 IPR038718 -
Lan6g0710 1149 MobiDBLite consensus disorder prediction 596 610 - -
Lan6g0710 1149 CDD DEXDc_SHPRH-like 408 720 - -
Lan6g0710 1149 MobiDBLite consensus disorder prediction 578 610 - -
Lan6g0710 1149 SMART ring_2 836 874 IPR001841 -
Lan6g0710 1149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 729 1148 IPR027417 -
Lan6g0710 1149 SMART helicmild6 1008 1091 IPR001650 -
Lan6g0710 1149 Pfam SNF2-related domain 428 797 IPR000330 GO:0005524|GO:0140658
Lan6g0710 1149 MobiDBLite consensus disorder prediction 578 595 - -
Lan6g0710 1149 CDD SF2_C_SNF 992 1101 - -
Lan6g0710 1149 Gene3D - 381 470 IPR038718 -
Lan6g0710 1149 SUPERFAMILY RING/U-box 833 879 - -
Lan6g0710 1149 ProSitePatterns Zinc finger RING-type signature. 851 860 IPR017907 -
Lan6g0710 1149 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 423 682 IPR014001 -
Lan6g0710 1149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 829 887 IPR013083 -
Lan6g0710 1149 ProSiteProfiles Zinc finger RING-type profile. 836 875 IPR001841 -
Lan6g0710 1149 Gene3D - 735 1149 IPR027417 -
Lan6g0710 1149 Pfam Zinc finger, C3HC4 type (RING finger) 836 873 IPR018957 GO:0046872
Lan6g0710 1149 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 223 1148 - -
Lan6g0710 1149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 720 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0710 Lan-Chr6 6293802 6303576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0710 299 1148 RAD5 or RAD16-like Gene Family AT1G61140 58.493 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan6g0710 SNF2_N 1.1e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0710 - - lang:109332935 1789.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0582 18 10726266 10738734 Lan6g0710 6 6293802 6303576 LSH
Lan6g0710 6 6293802 6303576 Lan4g0696 4 9378372 9388830 PCT
Lan4g0696 4 9378372 9388830 Lan6g0710 6 6293802 6303576 PCT