Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0702 ATGGGGAAAAAATCAGCGGCGACGGAGGAGGAAGAGGCATTGCCGGACCACCTGCGATGCGGGCGAACAGACGGGCGGCAATGGCGGTGCCGGCGGCGAGTTATGGACAATTTGAAGCTATGCGAGATTCACTACCTTCAAGGTCGTCATCGCCAGTTCAAAGAGAAAGTTCCAGAATCACTGAAGCTTCAAAGGAAGCGCAAGAAGAATAAGAAGGACCCTGTTGTCAATTTCAGCAGCAATGCAGAAATTAGGGCACAGAGAATGAAGAAAAAACGCAAGGTTTCAGAGGCATTGGGTTCTAAGAAGAAGGGGTTTAAGTTGAAGAATGGTGATAGCAATATGCAGTTGGAGCTTATAAGGATGGTTTTGCAGAGAGAAGTTGAGAAAAGGAAGAACACAAAGAAGATGAAGAAGGAAGAAGAGGAAGATTATGATGATGAAGAAACGGAATCAGATTACAATGAAGAAGAGTTAAGGAGAGAATTGCCTAATGGTGTAATGGCAATATCTCAAGCTTCAACGCCTCATCATTATAGCAATGTGGGTCCCGGATCACAAGCTCATTGTGATGTGAAAGTTGGTGTTGATTATAGAGCAGTTACACCACGTTACTTCCGGTCCAAGAATGTTGACAGGATCCATGGTGGCAAGTTGCAGGTTGTGCCATATGGGCCAAACATGAAGGGTAAGGGTCGGAGGAAGAAGTGTCATTGGTGCCAGAGAAGTGATTCTTGGAAACTTATAAAGTGTTCGAGCTGTCAGAATAACTTTTTCTGCATGGATTGCATTAAAGAAGGGTCTTTTGACACTCCATATGAAGTTAAGAAGGCATGTCCAGTTTGTCGAGGGACTTGCACCTGTAAGGACTGCTTGTCAAATCAATGTAAAGACAGTGAAAGTAAGGAATATTTGGCTGGTAAAAGCAGAGTAGATAGAATATTACATTGTCACTATTGGATCTGTATGCTCCTTCCGGTACTAAAGCAAATAAGTGATGAACAGAAAGCTGTGCTAGAAACAGAAGCAAAAAGCAATGGGAAAGAACTTTCTGATACTCAGATGAAGCAGCTTGACTTTGGCTACACTGAGAAAATTTGTTGCAATAACTGCAAAAGACCTGTTTCGGATCTCCATAGAAGCTGTCTTAGTTGTTCGTATAGCCTTTGCTTAAGTTGCTGTCAGAAATTAAGTCCAAGAAGGATTTCTGGAGGAACTAACTCATCTATGTTTAAGCTACCTGATAAGTTGAAAGCTTGCATTTCCCTGGATCAGAAGCCCATTTCCAGTGGCAATTTAACTGGTACTTCAGTATTGCCTGCCTGGACAAGTTGTAATGGTATTGATAATATATCATGCCCGCCTACAGAGCTTGGTGGTTGTGGTAACAGCCACCTTGATTTGAGATGTACTTTTCCCGTAAGTTGGATCGAAGAGATGGAAGTAAAAGCAGAAGAAATTGTGTGCAGCTATGACTTTCCTGAAACTTCAGATAAAAGTTCAAGCTGCTCACTCTGTTTTGACACAGATCACAAAATTAACAGATTTAAGTTGTTGCAAGAAGCAGCTTTCAGAGAAGATTCAAATGATAATTGCTTGTTTTATCCCACAGTTTTGGATATCAATGGTAATAATTTTGAACATTTTCAGAAACACTGGGGAAAAGGCCATCCTATGGTAGTGCGAGATGTGCTCCAAAGTTCATCGAACCTTAATTGGGATCCACTGATCATGTTCTGTAATTATCTTGAGAGGAGCATTGCAAGATATGAGAATAATAAGGAACTGCTTGAATCTTGTTTGGATTGGTGCGAGGTGGAGATTAACATTAGGCAGTATTTTGCTGGGTCTCTCAAGCGCCATCCACAGAAAAACACTTGCCATGAGATGCTGAAACTGAAGGGGTGGCTTTCTTCCAAGCTATTCAAAGAGCAGTTCCCAGCTCATTTTGCTGAAGTAATTGATGCTCTACCAGTTCAAGAATACATGAATCCCATGTCTGGTCTTTTAAATTTAGCTGCAAAGTTGCCGCAAGGGAGTTCAAAACATGAGATTGGGCCATATGTCTATATTTCATATGGCTGTGCTGACAAAGAAGCTAATTCTGTGACAAAACTCTGCTATGACTCATATGATGTGGTTAATATAATGGCACATTCCACAAATATCCCCCTTACTACTGAACTCCTTACAAAAATAAGGAAGTTACTGAAAAAGCAGAAAGCCCTGTGTCAAAGGGAGTCTTCTAAAATTTCTACCAAGCAGCTACAGGAGCAGAATGTGAATGGAATCCCATTATTGGATGCTCAAGACATGGAGCAAAAAGGATGGCAGAGTATGGCCACAGAAGGAAAGGACTTTTGCAGGAGAGTCAATAGAACATCTTGCATCTCAACTGAAACAAAAAAATCAGGGACTAGGAGTGTAGACAGCAATGCTAATCTGGATGGAGAGTGTGATATATTTTCTGATTCTGAGCCCTCTTTACTTCTCCATGGGTGTGTTCAAAGCACTGAATTGTTTACAAAAAATAATTCTATAAATCCTTCCCAAAACCCAAACAGTGAGAAAAGTAAGTTCACTGAGCATTCTGGTGCCCAGTGGGATGTTTTTCGCAGACAAGATGTGCCAAAGCTCATAGAATACCTTAAAAAACACTGTGATGAACTTTCTTATACTGGTGACTATCATCACAAGAAGATGGTTCATCCTATTCTAGATCAGAGCCTTTTTCTTGACAGCACTCACAAAAAGAGGCTTAAGGAGGAGTTTAAGATTGAACCCTGGACTTTTCAGCAACATGTTGGAGAAGCTGTCATCATCCCTGCTGGATGTCCATACCAGATAAGGAATTCTAAGTGCTGTGTACATGTTGTGTTGGAATTTGTGTCGCCGGAAAATGTTAGTGAGTGTATCAAGTTGATCGACGAGGTTCGCCTGCTGCCGGATGACCATAAAGCAAAAGTAGACAAGTTAGAGGTGAAGAAACTGGCCCTTCATAGCATGAGTACAGCAATTAAAGAAGTACATGAGCTTACATGCAAAACATGA 3051 0.413 MGKKSAATEEEEALPDHLRCGRTDGRQWRCRRRVMDNLKLCEIHYLQGRHRQFKEKVPESLKLQRKRKKNKKDPVVNFSSNAEIRAQRMKKKRKVSEALGSKKKGFKLKNGDSNMQLELIRMVLQREVEKRKNTKKMKKEEEEDYDDEETESDYNEEELRRELPNGVMAISQASTPHHYSNVGPGSQAHCDVKVGVDYRAVTPRYFRSKNVDRIHGGKLQVVPYGPNMKGKGRRKKCHWCQRSDSWKLIKCSSCQNNFFCMDCIKEGSFDTPYEVKKACPVCRGTCTCKDCLSNQCKDSESKEYLAGKSRVDRILHCHYWICMLLPVLKQISDEQKAVLETEAKSNGKELSDTQMKQLDFGYTEKICCNNCKRPVSDLHRSCLSCSYSLCLSCCQKLSPRRISGGTNSSMFKLPDKLKACISLDQKPISSGNLTGTSVLPAWTSCNGIDNISCPPTELGGCGNSHLDLRCTFPVSWIEEMEVKAEEIVCSYDFPETSDKSSSCSLCFDTDHKINRFKLLQEAAFREDSNDNCLFYPTVLDINGNNFEHFQKHWGKGHPMVVRDVLQSSSNLNWDPLIMFCNYLERSIARYENNKELLESCLDWCEVEINIRQYFAGSLKRHPQKNTCHEMLKLKGWLSSKLFKEQFPAHFAEVIDALPVQEYMNPMSGLLNLAAKLPQGSSKHEIGPYVYISYGCADKEANSVTKLCYDSYDVVNIMAHSTNIPLTTELLTKIRKLLKKQKALCQRESSKISTKQLQEQNVNGIPLLDAQDMEQKGWQSMATEGKDFCRRVNRTSCISTETKKSGTRSVDSNANLDGECDIFSDSEPSLLLHGCVQSTELFTKNNSINPSQNPNSEKSKFTEHSGAQWDVFRRQDVPKLIEYLKKHCDELSYTGDYHHKKMVHPILDQSLFLDSTHKKRLKEEFKIEPWTFQQHVGEAVIIPAGCPYQIRNSKCCVHVVLEFVSPENVSECIKLIDEVRLLPDDHKAKVDKLEVKKLALHSMSTAIKEVHELTCKT* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0702 1016 Coils Coil 124 158 - -
Lan6g0702 1016 SMART cupin_9 646 979 IPR003347 -
Lan6g0702 1016 ProSiteProfiles JmjC domain profile. 665 979 IPR003347 -
Lan6g0702 1016 ProSiteProfiles Zinc finger RING-type profile. 237 283 IPR001841 -
Lan6g0702 1016 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Lan6g0702 1016 MobiDBLite consensus disorder prediction 85 107 - -
Lan6g0702 1016 Pfam JmjC domain, hydroxylase 864 960 IPR003347 -
Lan6g0702 1016 PANTHER PROTEIN B160 9 1015 - -
Lan6g0702 1016 SUPERFAMILY Clavaminate synthase-like 542 1002 - -
Lan6g0702 1016 MobiDBLite consensus disorder prediction 129 157 - -
Lan6g0702 1016 Gene3D Cupin 537 988 - -
Lan6g0702 1016 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 9 1015 IPR045109 GO:0032454|GO:0033169
Lan6g0702 1016 Pfam WRC 15 56 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0702 Lan-Chr6 6191525 6198071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0702 15 102 GRF Transcription Factor Family AT4G37740 34.409 4.53e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lan6g0702 JmjC 4.2e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0702 K15601 - gmx:100810673 1365.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0702 6 6191525 6198071 Lan19g0982 19 17219833 17225876 PCT
Lan19g0982 19 17219833 17225876 Lan6g0702 6 6191525 6198071 PCT