Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0698 ATGGATACTCATCTTCCCGACCACTTCAAATGCCCAATATCACTTGAAATTATGTCCGACCCCGTCATCCTCTCCTCCGGTCACACCTTTGATCGCTCATCCATTCAACGCTGGCTCGACCACGGTCACCGTACATGTCCAATTACCAAACTACCCCTCCCCGATCACCCTTCCCTTATCCCTAACCATGCCCTCCGCAGCTTAATCTCCACTTTCTCCCTCCCCGATTCAAAAACCCGACCCGAAACATGTGCCCTAATCTCAACCCTCGTGTCCCCTTCCTCCACCGTCTCCTCCAAAGCCCAATCCCTCCGCCTCCTCCGCCGCTTCTCCGCTAGAGATTCCGCTTTCCGGCGATGTATTTCTGATTCTGGTGTTGTCTCTGTTGTACTCGCTTGCGTTGACTCTAATGTCTCTTCCCTTCAGGAGAGTGCGCTTTCCCTTTTGCTTACGCTTAGCCTTGACGACGATAACAAGGTTGGACTCGTCGCCGAGGGTGCTATTGACCGTCTCGTGCCGGTTCTTCTTGACCGGGAGGCTGTGCCGGATTGCCGTGCTGTGGCTGCGACGGTTCTGACTAGTCTGGCGGTTGTGGAGGTTAACAAGGCAACTATAGGTGCGTACCCGAACGCAATCGCGGCTCTTGTTTCGGTTCTTCGGGATGGTAAGGGGGGAAGGGAGAGGAAAGAAGCGGCCACTGCGCTTTACACGGTCTGCTCTTTTCCGGAGAATCAGAGAAGAGCGGTGAAATGTGGCGCCGTGCCGGTTTTGCTTAGGAATGTTGGTTCTGGGCTTGAAAGGGGTGTTGAGGTTCTTGGTGTTTTGGCTAAGTGTAAAGAAGGGAGGGAGGAAATGGAAGGTTATGATGGGTGTGTGAAGATTTTGGTTCATGTGTTGAGTAATGGAAGCTGTAGAGGGATTCAGTATGCATTGTTGGCACTGATTTCACTTTGTACTAATAGTGAAGAAATGATCATGGTGGCTCTGGAAGAAGGGGTTTTGGAAATTTGTGTTGGGTTGATGGAGGATGATAATGAGAAAGTGAGGAGAAACACGTCCAATCTGATTCAGGTTCTGCGGGGGAACCACCATTGGATTGGTTTGTGA 1107 0.5131 MDTHLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDHGHRTCPITKLPLPDHPSLIPNHALRSLISTFSLPDSKTRPETCALISTLVSPSSTVSSKAQSLRLLRRFSARDSAFRRCISDSGVVSVVLACVDSNVSSLQESALSLLLTLSLDDDNKVGLVAEGAIDRLVPVLLDREAVPDCRAVAATVLTSLAVVEVNKATIGAYPNAIAALVSVLRDGKGGRERKEAATALYTVCSFPENQRRAVKCGAVPVLLRNVGSGLERGVEVLGVLAKCKEGREEMEGYDGCVKILVHVLSNGSCRGIQYALLALISLCTNSEEMIMVALEEGVLEICVGLMEDDNEKVRRNTSNLIQVLRGNHHWIGL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0698 368 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Lan6g0698 368 SUPERFAMILY ARM repeat 86 359 IPR016024 -
Lan6g0698 368 SUPERFAMILY RING/U-box 4 73 - -
Lan6g0698 368 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 360 - -
Lan6g0698 368 SMART arm_5 155 197 IPR000225 GO:0005515
Lan6g0698 368 SMART arm_5 114 154 IPR000225 GO:0005515
Lan6g0698 368 SMART arm_5 321 361 IPR000225 GO:0005515
Lan6g0698 368 SMART arm_5 278 319 IPR000225 GO:0005515
Lan6g0698 368 Pfam U-box domain 6 73 IPR003613 GO:0004842|GO:0016567
Lan6g0698 368 Gene3D - 267 360 IPR011989 -
Lan6g0698 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 74 IPR013083 -
Lan6g0698 368 CDD RING-Ubox_PUB 9 50 IPR045210 -
Lan6g0698 368 PANTHER U BOX DOMAIN-CONTAINING 1 360 - -
Lan6g0698 368 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Lan6g0698 368 Gene3D - 85 266 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0698 Lan-Chr6 6155492 6156950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0698 1 361 U-box Gene Family AT4G21350 59.517 6.86e-138 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0698 - - gmx:100785141 468.388