Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0681 ATGGATCATCCAACATGGTACCATTGTTGTGTCCACAAACAACAACAACTCCAAAACCTAAAACTCGCTGACTCCTTCAGAATTGAAGCTCATGCCTTTATTCGATATTACCTACCAATGAATGATCCCAACTCACATCCACTTATAATAGACACAATACCCTTGTTTCAAACCTCTTTCAACCTACCCTGCAAACATATCTTCGAAATTAACCACAAAGATTTTCTACGAAGAAACTTAGTGAACTCATTATATGCAACCCTCTTGACCTATGGTTCTCCGGATCACATTGAGAGCCTATCATGTGAGATAATAGCTCAGCTACGAGAACTTTATATTAGTCATGCTTCAAAACATGGATTCACAGAATCACCAGATTTGATAGGCGAATCGTTTGATTTTGATGTAAATATTAGTATTGACGTGCCCATTAACATCAGTGATGAAGAGTTGGGTGTACAAGAACAATTGTCCATGCAAGAAGATGTGAAGATGGTTCCAGCATCTAACAAAGACGTGCAATCTTTGAAAACATATAAGCTTCCACAGCAATGCCAAATATGTTTGGAAAAGTTCTATGGGGAGAAAGAAGATGACGATGGTGACGTAGAGATCACAACAATGCCATGTGGTCATGTGTTTCACCATCACTGTATCATACAGTGGCTACAAACCAGTCATATGTGTCCTTTGTGTCGTTCCCCTCTATCTACTGACAATAAAAGAAAAAGATAA 735 0.385 MDHPTWYHCCVHKQQQLQNLKLADSFRIEAHAFIRYYLPMNDPNSHPLIIDTIPLFQTSFNLPCKHIFEINHKDFLRRNLVNSLYATLLTYGSPDHIESLSCEIIAQLRELYISHASKHGFTESPDLIGESFDFDVNISIDVPINISDEELGVQEQLSMQEDVKMVPASNKDVQSLKTYKLPQQCQICLEKFYGEKEDDDGDVEITTMPCGHVFHHHCIIQWLQTSHMCPLCRSPLSTDNKRKR* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0681 244 ProSiteProfiles Zinc finger RING-type profile. 185 233 IPR001841 -
Lan6g0681 244 Pfam Ring finger domain 184 233 IPR001841 -
Lan6g0681 244 PANTHER F6A14.12 PROTEIN-RELATED 125 236 - -
Lan6g0681 244 SUPERFAMILY RING/U-box 184 238 - -
Lan6g0681 244 SMART ring_2 185 232 IPR001841 -
Lan6g0681 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 238 IPR013083 -
Lan6g0681 244 SMART ringv_2 184 233 IPR011016 GO:0008270
Lan6g0681 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 125 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0681 Lan-Chr6 6045827 6046579 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0681 150 236 C3H Transcription Factor Family AT1G18760 36.559 3.14e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0681 - K22378 lang:109350403 516.153