Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0680 ATGGATAATCCAATATGGTACCATTGTTGGGTCCAGCAACGACAACAACTCCGAAACCTAAAACTCAAAGACTCCTTCAAAATCGAAGTTAAAGCCCTCCTTCGATATTACCTCCCAATCAATGATCCTAACTCTCATTCACCTATCATAGATACAATATCCTTGTTCCAAACCTCTATCACCCTACCCTGCAAACATATCTTTGAAATTAACCATAAAGATTTCCTTCGAAAATACTTAGGAAACTCATCATATGCAACCCTCTTGACCTATGGTTCTCCACATCAGATTGAGAACCAATCATGTGAGATAATAGCTCAGCTCCGAGAACTTTACATTAGTCATGCTTCAAGTCATGGATTCACAAAATCATCAAATTTAAGAAGCAAATCGTTTGGTTGCGATGTAAATATTAGCATTGATGTGCCCATTGACACTAGTGATGAAGAGTTGGGTGCACAAGAACAATTGTCCATGCAAGAAGGTGTGAAGATGGTTCCAGCATCTCACAAAGATGTGCAGTCTTTGAAAACATACAAGCTTCCACAGCAATGCCAAATATGTTTGGAAAAGTTCTATGGGGAGAAAGAAGATGATGACGACGTAGAGATCACAGCAATGCCATGTGGTCATGTCTTTCACCATCATTGTATCATACAATGGCTGCAAACCAGTCACATGTGTCCTTTATGTCGTTCCCCTCTATCTACTGACAACAAAAGAAAAAGATAA 732 0.3921 MDNPIWYHCWVQQRQQLRNLKLKDSFKIEVKALLRYYLPINDPNSHSPIIDTISLFQTSITLPCKHIFEINHKDFLRKYLGNSSYATLLTYGSPHQIENQSCEIIAQLRELYISHASSHGFTKSSNLRSKSFGCDVNISIDVPIDTSDEELGAQEQLSMQEGVKMVPASHKDVQSLKTYKLPQQCQICLEKFYGEKEDDDDVEITAMPCGHVFHHHCIIQWLQTSHMCPLCRSPLSTDNKRKR* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0680 243 ProSiteProfiles Zinc finger RING-type profile. 185 232 IPR001841 -
Lan6g0680 243 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 102 235 - -
Lan6g0680 243 SMART ring_2 185 231 IPR001841 -
Lan6g0680 243 Pfam Ring finger domain 184 232 IPR001841 -
Lan6g0680 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 237 IPR013083 -
Lan6g0680 243 SMART ringv_2 184 232 IPR011016 GO:0008270
Lan6g0680 243 SUPERFAMILY RING/U-box 184 237 - -
Lan6g0680 243 PANTHER F6A14.12 PROTEIN-RELATED 102 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0680 Lan-Chr6 6031223 6031954 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0680 150 235 C3H Transcription Factor Family AT1G18760 33.696 1.50e-12 63.2