Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0633 ATGGATCCACTCCCTATGATCAACGACACCTCCGCCAATACGCCGCCGTTTCACTTATCCGAGATCTGGCAGTTTCCCGCGACAGGGGTGTCGGGTATAAGTGACAACGGGTTAGGGCTTAGAACGTCGTCGTTTGGACACGGGTTGGGTCAGTTCGGTGATTTTGGACCGACCCGTCATGTTTCCACCAGCAATGGCGGTGGTGTCAGTGCCATGAGTGATGGTGGTGATGGGAAACGGGCGAAGACAACAGGGAGCAACATAAATGAGAGTGGAAAAGGTGAAACAGAAACCAGTTCAGGAAAGCATGCGGAGCAAGAACAAACTACACCCGAGCCTCCTCTTAAACAAGATTACATCCATGTTAGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCTAGAAGAGAAAAGATCAGTGAAAGGATGAAAATTCTTCAGGATCTAGTCCCTGGTTGTAATAAGGTTATTGGGAAAGCATTAGTCCTTGATGAGATAATTAATTATATCCAATCTCTTCAGCGCCAAGTAGAGTTCTTGTCAATGAAGCTTGAAGCAGTAAATTCAAGAATGACCCCTGGCATTGAAGTATTTCCTCCTAAAGATTTTCATCAGCAAACATTTGACACAACCGGCATACCATTCACTTCACAAACAACAAGAGAGTATAGCCGGGGCTCATCACCAGAGTGGTTACATATGCAGGTAGGTGGTTTCGAAAGAACAAAGTAG 747 0.4605 MDPLPMINDTSANTPPFHLSEIWQFPATGVSGISDNGLGLRTSSFGHGLGQFGDFGPTRHVSTSNGGGVSAMSDGGDGKRAKTTGSNINESGKGETETSSGKHAEQEQTTPEPPLKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMTPGIEVFPPKDFHQQTFDTTGIPFTSQTTREYSRGSSPEWLHMQVGGFERTK* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0633 248 Gene3D - 125 198 IPR036638 GO:0046983
Lan6g0633 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 178 IPR011598 GO:0046983
Lan6g0633 248 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 73 247 IPR024097 GO:0006355
Lan6g0633 248 MobiDBLite consensus disorder prediction 80 95 - -
Lan6g0633 248 PANTHER BNAC05G07950D PROTEIN 73 247 - -
Lan6g0633 248 CDD bHLH_AtBPE_like 118 203 - -
Lan6g0633 248 SMART finulus 134 184 IPR011598 GO:0046983
Lan6g0633 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 197 IPR036638 GO:0046983
Lan6g0633 248 Pfam Helix-loop-helix DNA-binding domain 132 179 IPR011598 GO:0046983
Lan6g0633 248 MobiDBLite consensus disorder prediction 56 117 - -
Lan6g0633 248 Coils Coil 175 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0633 Lan-Chr6 5573549 5577081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0633 1 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 52.672 1.22e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan6g0633 HLH 1.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0633 - - lang:109332242 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0629 17 5409020 5412159 Lan6g0633 6 5573549 5577081 LSH
Lan18g0654 18 11662986 11671435 Lan6g0633 6 5573549 5577081 LSH
Lan6g0633 6 5573549 5577081 Lan1g0980 1 20322741 20324155 PCT
Lan1g0980 1 20322741 20324155 Lan6g0633 6 5573549 5577081 PCT