Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0626 ATGAAGAGGTCTAGAGAGGATGGTCTCGCGAGTTCTCAACTCAAACGCCCCTTTATGTCTAGAGGAGAAGCGTCGGGGCAACCCCAGATGCTGAATGGAGGTGGTCAGAAATTAACTACCAATGATGCATTAGCATATCTCAAGGCAGTAAAGGACATGTTTCAAGATAAGAAGGACAAGTATGATGAGTTTTTGGAAGTCATGAAAGACTTCAAGGCTCAAAGACTTGATACTACGGGTGTCATAGAAAGAGTCAAGGAACTCTTTAAAGGGAACAGAGACCTGATATTAGGATTTAACACCTTCTTGCCTAAAGGATATGAAATCACACTTCCACTAGATGATGAACAACCTCCCCAGAAGAAGCCTGTGGAATTCGAAGAAGCTATAAATTTTGTGAACAGGATTAAGGCTCGGTTTCAAGGTGATGATCGTGTTTACAAGTCATTTTTAGACATATTGAATATGTACAGAAAGGAAAACAAAACTATCACTGAGGTCTACCAAGAGGTTGCTGCACTTTTCCAAGGCCATCATGATCTTCTTGATGAGTTTACTCATTTTCTTCCAGACACTTCTACAGCTGTTTCTGCCCGAAATTCTATGGTTCGTGATAGGAGCTCCGCGATGCCAACAGTACGGCAAATGCACGTTGACAAGAGAGAAAGGATCATGGCTTCACGTGGTGATCATGACCTCAGTGTGCACTGTCCTGGCCCAGACCATGACAGAGGTTTGATGAGGGCAGAAAAGGAGCAGAGGAGACGTCTGGAGAAGGAAAGAGACCGTAGAGAAGATAGAGACAGGAGAGAAAGGGAAAGAGGTGATAGAGATTATGAGCATGACGCTGGTCAGGATAGGGAGCGGTTCTCCCACAAATGGAAATCTAATCATATGGCTGAAGACTTTGGAGCTGAACCATTGCTTGATGCAGATGAAAATTTTGGTAAGTGTAGTCAGGAGCTAGCCTTCTGTGAAAAGGTGAAAGCTAAATTACGAAATTCCGACGACTACCAGGAATTTTTGAAGTGTCTACATATTTACAGCAAGGCAATAATTACCCAACATGAATTGAAGTCACGGGTGGGTGATTTACTAGGGAAATATCCAGATCTTGTGGAGGGATTTAATGAATTTTTGGTACAATCTGAAAAGAATGATGGTGGATTCTTCGCTGGTGTCCTGAATAAAAAGTCTGTATGGAGTGAAGGACAAGGACCAAAACCAATGAAAGTTGAAGACAGGGATAGAGATCGAGACCGTCATAGGAATGATGGGTTGAAGGAAAGGGACCGTGAATGCAGAGAAAGGGGAAAATCTACTGCGATTGCCTTCAAGGATGTTTCAGGTTCTAGGGTGTCTTTATATCCCAGCAAGGATATGTACTTGTCAAAACCTATAAATGAGCTGGACCTTTCCAATTGTGAACAATGCACTCCCAGTTACCGTCTCCTACCAAAAAATTACCCAATACCTTTAGCTAGCCAGAAAACAGAACTTGGCGCAGAAGTATTAAATGATCACTGGGTGTCGGTCACTTCAGGAAGTGAGGATTATTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTATATGTGAAGATGACAGGTTTGAACTTGATATGTTATTAGAGTCTGTAAATGTGACAACTAGGCGGGTAGAAGAGCTGTTAGAAAAGATCAATAGAAATGTAATTAAAGGAGGCAGTCCTATTCGTATTGAGGAACACTTAACAGCTCTAAATCTTAGGTGCATTGAACGATTGTATGGTGACCACGGGCTTGATGTGATGGATGTGTTAAGGAAGAATGCATCTCTAGCTTTGCCAGTCATATTAATGCGGTTGAAGCAGAAACAGGATGAGTGGGAAAGGTGTCATGCAGATTTTAATAAAGTTTGGGCTGAAATATATGCTAAGAACTATCACAAATCTCTCGATCACCGCAGTTTCTACTTTAAGCAACAGGATACAAAGAGCTTGAGCACTAAAGCCTTACTGGCAGAAATAAAAGAAATCAGTGAGAAGAAACGAAAAGAAGATGACATTCTTCTTGCCATTGCTGCTGGAAACAGACGGCCTATTCTTCCAAACTTGGAGTTTGAGTATCCTGATCCAGATATTCATGAAGATTTGTATCAGCTCATAAAATATTCATGTGGAGAAATTTGTACAACTGAGCAGTTGGATAAAATTATGAAGATTTGGACAACATTTTTAGAACCAGTGCTTTGTGTTCCTTCTCGGCCCTCTGGTGCTGAGGATACAGAAGATGCTGTCAAGGCTACACATAATTCTTTCAAAAGTGGAACTGCAGGTTTTAATGAGAGGGATGATAGTCCTGGTTTTGGTACTAGTATAATGAATTCAAAGCATTTGAATAGTTCTGGAATTGGGGATGTGTGTATGCCTTTAGATAAGTCAAATTCTATCAAAGCATGCCAATCAAATAGCAATTGTGGGGTTAAAGAAGATAAGTGTCTTGATCCAGACCCTAGTGGGAGTAAAACTGAAACTTTGGACAGTAATATACCGAATGACATAATGAATAACAGTGCATTCACGCCTGATGAGTTATCAGGAGTCAATAAGCAAGATCACTCGGGTGAGCGGTTAGTGAATACTAATGTCTCGCCGGCATCTGGAATGGAGCAAAGTAATCGAAGAACAGAGATAGACAATGCATCAGGTCCTGCTGCTACTCCATCTAGAACCGGTAATGTTTCTGTCGAGGGAGGACATGATTTACCTTCAGAGGTTGGTGATTCTACAAGATATGGTACATCCACAAATGCGGCCGTCACTGAAGGCACCAGAGTTCACAGACACAAAGAAGGATCAGTTCAACATTTTAAAGGTGACAGAGAAGAGGGTGAGTTATCTCCAAATGTTGACTTCGAAGAAGATAATTTCAGAGTTTATGGAGATGGTGGCTTGGACGTACTGCATAAAGCAAAGAATAGTGGTTTGAGTCCGCAATACCAAAATAGACACAGGGAAGAAGCTTTTGGTGAAGCCAGAGGAGAAAATCATGCCCATGCTGATGATGAAGGTGAGGAAAGTCCTCACAGGTCATCAGGGGATATTGAAAATGCTTCTGAAAATGATGTTTCTGGAAGTGAGTCTGCTGAAGGCGAGGAGTGTTCTCGAGAGGATCGTGAGGATGGGGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATGGGCGATGCCCATGATGTTGAAGGGGATGGAACCTCATTGCCACTTTCAGAACACTTTCTTCTAACTGTTAAGCCTCTGGTAAAGCATGTACCGCCGGTGTTGCACGTGAAAGAATGGAATTCTCAAGTTTTTTATGGAACTGATTCCTTTTATGTTCTGTTTAGACTTCATCAGACGTTGTATGAGAGGATACGATCGGCAAAGATTAACTCATCATCTGCTGAAAGAAAATGGGGGGCTTCAAATGATACAAACTCTCGTGATCAATATGACAGGTTCATGAATGCCCTTTACAATCTACTGGATGGCTCTTCTGATAATGCGAAATTTGAGGACGATTGTCGAGCTGTCATTGGAACTCAATCATATCTCTTATTCACATTAGACCAGTTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCACTGATGAGATGGATAATAAGCTTCTTCAATTATATGCATATGAAAAATCAAGAAAACCTGGAAGATTTGTTGATATCTTTTATCATGACAATGCCCATGTTCTTCTTCATGATGAGAACATATATCGTATTGAATATTCACCTAGACCGATGCAATTGTCTATTCAACTGATGGACCATGGACATGACAATCCGGAAGTGACTGCTATGTCCATGGACCCTAATTTTTCAGCCTATCTGCACAGAGACTTCCTCTCTGTTGTCCCTGATAAAAAGGAGAAGTCGGGAATTTTTTTGAAGAGGAATAAACGTAGATATACCTGTGATGATGAAGTTTCAAGCCAGGCTATGGATGGACTAAAGGTTATGAATGGCCTGGAGTGTAAGATAGCTTGCAGCTCATCTAAGGTTTCGTATGTATTAGATACTGAAGACTTTTTGGTTCGGATGGGAAGGAAACGAACCTTGCATCTGAAGGGTTCAGGCCATGAACAGGCAAAGTCTTCAAAGCGATCCTGCAAATTGTTTTCCAGTCCATGA 4191 0.4133 MKRSREDGLASSQLKRPFMSRGEASGQPQMLNGGGQKLTTNDALAYLKAVKDMFQDKKDKYDEFLEVMKDFKAQRLDTTGVIERVKELFKGNRDLILGFNTFLPKGYEITLPLDDEQPPQKKPVEFEEAINFVNRIKARFQGDDRVYKSFLDILNMYRKENKTITEVYQEVAALFQGHHDLLDEFTHFLPDTSTAVSARNSMVRDRSSAMPTVRQMHVDKRERIMASRGDHDLSVHCPGPDHDRGLMRAEKEQRRRLEKERDRREDRDRRERERGDRDYEHDAGQDRERFSHKWKSNHMAEDFGAEPLLDADENFGKCSQELAFCEKVKAKLRNSDDYQEFLKCLHIYSKAIITQHELKSRVGDLLGKYPDLVEGFNEFLVQSEKNDGGFFAGVLNKKSVWSEGQGPKPMKVEDRDRDRDRHRNDGLKERDRECRERGKSTAIAFKDVSGSRVSLYPSKDMYLSKPINELDLSNCEQCTPSYRLLPKNYPIPLASQKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFICEDDRFELDMLLESVNVTTRRVEELLEKINRNVIKGGSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILMRLKQKQDEWERCHADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDILLAIAAGNRRPILPNLEFEYPDPDIHEDLYQLIKYSCGEICTTEQLDKIMKIWTTFLEPVLCVPSRPSGAEDTEDAVKATHNSFKSGTAGFNERDDSPGFGTSIMNSKHLNSSGIGDVCMPLDKSNSIKACQSNSNCGVKEDKCLDPDPSGSKTETLDSNIPNDIMNNSAFTPDELSGVNKQDHSGERLVNTNVSPASGMEQSNRRTEIDNASGPAATPSRTGNVSVEGGHDLPSEVGDSTRYGTSTNAAVTEGTRVHRHKEGSVQHFKGDREEGELSPNVDFEEDNFRVYGDGGLDVLHKAKNSGLSPQYQNRHREEAFGEARGENHAHADDEGEESPHRSSGDIENASENDVSGSESAEGEECSREDREDGEHDNKAESEGEAEGMGDAHDVEGDGTSLPLSEHFLLTVKPLVKHVPPVLHVKEWNSQVFYGTDSFYVLFRLHQTLYERIRSAKINSSSAERKWGASNDTNSRDQYDRFMNALYNLLDGSSDNAKFEDDCRAVIGTQSYLLFTLDQLIYKLVKQLQAVATDEMDNKLLQLYAYEKSRKPGRFVDIFYHDNAHVLLHDENIYRIEYSPRPMQLSIQLMDHGHDNPEVTAMSMDPNFSAYLHRDFLSVVPDKKEKSGIFLKRNKRRYTCDDEVSSQAMDGLKVMNGLECKIACSSSKVSYVLDTEDFLVRMGRKRTLHLKGSGHEQAKSSKRSCKLFSSP* 1397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0626 1396 SUPERFAMILY PAH2 domain 36 105 IPR036600 GO:0006355
Lan6g0626 1396 MobiDBLite consensus disorder prediction 1375 1396 - -
Lan6g0626 1396 Coils Coil 247 267 - -
Lan6g0626 1396 ProSiteProfiles PAH domain profile. 122 192 IPR003822 GO:0006355
Lan6g0626 1396 MobiDBLite consensus disorder prediction 1046 1079 - -
Lan6g0626 1396 Gene3D Paired amphipathic helix 42 104 IPR036600 GO:0006355
Lan6g0626 1396 Gene3D Paired amphipathic helix 120 193 IPR036600 GO:0006355
Lan6g0626 1396 MobiDBLite consensus disorder prediction 831 931 - -
Lan6g0626 1396 PANTHER SIN3B-RELATED 2 1372 IPR039774 GO:0003714
Lan6g0626 1396 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 2 1372 - -
Lan6g0626 1396 MobiDBLite consensus disorder prediction 838 911 - -
Lan6g0626 1396 Pfam Sin3 family co-repressor 476 567 IPR013194 -
Lan6g0626 1396 MobiDBLite consensus disorder prediction 227 291 - -
Lan6g0626 1396 MobiDBLite consensus disorder prediction 402 433 - -
Lan6g0626 1396 MobiDBLite consensus disorder prediction 1 35 - -
Lan6g0626 1396 ProSiteProfiles PAH domain profile. 36 106 IPR003822 GO:0006355
Lan6g0626 1396 Gene3D Paired amphipathic helix 316 384 IPR036600 GO:0006355
Lan6g0626 1396 MobiDBLite consensus disorder prediction 1007 1085 - -
Lan6g0626 1396 MobiDBLite consensus disorder prediction 943 967 - -
Lan6g0626 1396 Pfam C-terminal domain of Sin3a protein 1118 1364 IPR031693 -
Lan6g0626 1396 MobiDBLite consensus disorder prediction 408 433 - -
Lan6g0626 1396 ProSiteProfiles PAH domain profile. 311 383 IPR003822 GO:0006355
Lan6g0626 1396 SMART hdac_interact2seq4b 474 574 IPR013194 -
Lan6g0626 1396 MobiDBLite consensus disorder prediction 1007 1033 - -
Lan6g0626 1396 SUPERFAMILY PAH2 domain 319 381 IPR036600 GO:0006355
Lan6g0626 1396 Pfam Paired amphipathic helix repeat 146 189 IPR003822 GO:0006355
Lan6g0626 1396 Pfam Paired amphipathic helix repeat 59 103 IPR003822 GO:0006355
Lan6g0626 1396 Pfam Paired amphipathic helix repeat 336 380 IPR003822 GO:0006355
Lan6g0626 1396 SUPERFAMILY PAH2 domain 118 191 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0626 Lan-Chr6 5502572 5526577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0626 2 141 WRKY Transcription Factor Family AT4G12020 40.141 1.43e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan6g0626 Sin3a_C 6e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0626 K11644 - gmx:100811928 2071.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0659 18 11705800 11719162 Lan6g0626 6 5502572 5526577 LSH