Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0620 ATGGAAGGATCCAAAGATGTTCATGTTTTGGCCGTCGATGATAGCTTCGTTGATCGTAAGGTCATTGAACGCTTGCTCAAAATCTCATCTTGTAAAGTTACTGCTGTTGATAGTGGAACCAGAGCATTACAATTTCTGGGGCTAGATGAGCAGAGAAGAACCTCTGATTCTGATGAAGGCTTTGTTCAGGGTTTGAAAGTGGATCTAATTATCACAGACTACTGCATGCCAGGAATGACTGGTTATGAGTTGCTAAAGAAAATCAAGGAATCATCCACTTTCAGAGAAATTCCTGTGGTGATTATGTCTTCTGAAAACATTTTGCCGCGCATAGACAGATGCTTGGAGGAAGGTGCAGAGGATTTCATAGTGAAGCCAGTGAAGTTATCGGACGTTAAACGGTTGAAGGGATACATGAACAACAACAGGGATGGTAAGGTGGGAATAAGCCAAGACTACAGTGGCGATGGTGACAAAAGCGATGTGAGAATCAACAAGAGAAAGGTCTCGAACATCGCTCATGTGTCATCATCGTCACCGTTCATTTTGTCGTCATTGTCACTATCATCTATTTTGTCATCATCGTCACCACCATCTATTTTGTTCATGACGGTCATATATTTTGTCGTCATCATCACCATCATGGCTCACCTCTCCTTCACCATCATCTTCACCCGTAACTATTGA 687 0.4236 MEGSKDVHVLAVDDSFVDRKVIERLLKISSCKVTAVDSGTRALQFLGLDEQRRTSDSDEGFVQGLKVDLIITDYCMPGMTGYELLKKIKESSTFREIPVVIMSSENILPRIDRCLEEGAEDFIVKPVKLSDVKRLKGYMNNNRDGKVGISQDYSGDGDKSDVRINKRKVSNIAHVSSSSPFILSSLSLSSILSSSSPPSILFMTVIYFVVIITIMAHLSFTIIFTRNY* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0620 228 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 196 IPR045279 GO:0009736
Lan6g0620 228 Gene3D - 7 152 - -
Lan6g0620 228 Pfam Response regulator receiver domain 9 132 IPR001789 GO:0000160
Lan6g0620 228 ProSiteProfiles Response regulatory domain profile. 8 140 IPR001789 GO:0000160
Lan6g0620 228 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 4 196 - -
Lan6g0620 228 SUPERFAMILY CheY-like 6 134 IPR011006 -
Lan6g0620 228 SMART REC_2 7 139 IPR001789 GO:0000160
Lan6g0620 228 CDD REC_typeA_ARR 9 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0620 Lan-Chr6 5453239 5454793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0620 6 142 Response Regulator Gene Family AT1G10470 73.723 9.27e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan6g0620 Response_reg 1.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0620 K14492 - gmx:100787696 243.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0620 17 5278696 5280081 Lan6g0620 6 5453239 5454793 LSH