Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0617 ATGAAAAAGGACATATGTGAACTTTCCTCTGCATGGGAAGGTGATAATGGAAATTCTATGGATAAGAGGCTAAGGCTATTTGGCTTTGAGCTGAACCCATCCAAGAATAATGAGGGCTGTGTAAAAGAGCCTGCAGAAGGAGATGAAAGTGTGAATTCCACAAACTCATTTTCATCAGGAGAGAAAATTGCTCAAGAGAAAAGCTCAGCCGGGGACCAAGATGAGAGAAAATTTGAGTGCCAATACTGTTTGAAGGAATTTGCAAATTCACAAGCATTAGGAGGCCACCAAAATGCTCACAAGAAAGAGAGAATGAAGGAAAAAAGGTTGCAGCTTCAAGCCAGAAAGGCTAGCATAAAATACTACCTACAACCTTTTCAAACAAATAACCATGGTTTTGCTTACCATGGCTCTAATACTCATTGGTTCTATGACCCCTCTTCATATAATAATAACTCTGATTTCACCTTCTGTGAAGAATCTCAGATCAGCTTCAACTCAAATGATCAAAATACCAATTTTGTTACTTCTGACAAGAGATATTCAAATTGGTATAATTCTCTGCCATCCCATACTCCTTCTAAACAAGATACTTCTTGCATGTTCACTTTCTCCAATCCAGATAATAATAATAGGCCTTTTATCTCCGAGCCTTACCATTTACCTGCTTCAAACCAGAGCCATAATAAAGCTTTGGATCTTCAACTAGGCCTAAACTTGGAATCAAATACAAGAAGCCTCTCTAAGAAGGGTGTAATTTAA 762 0.3806 MKKDICELSSAWEGDNGNSMDKRLRLFGFELNPSKNNEGCVKEPAEGDESVNSTNSFSSGEKIAQEKSSAGDQDERKFECQYCLKEFANSQALGGHQNAHKKERMKEKRLQLQARKASIKYYLQPFQTNNHGFAYHGSNTHWFYDPSSYNNNSDFTFCEESQISFNSNDQNTNFVTSDKRYSNWYNSLPSHTPSKQDTSCMFTFSNPDNNNRPFISEPYHLPASNQSHNKALDLQLGLNLESNTRSLSKKGVI* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0617 253 PANTHER ZINC FINGER PROTEIN 5 18 240 IPR044299 GO:0010090
Lan6g0617 253 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Lan6g0617 253 PANTHER ZINC FINGER PROTEIN 5 18 240 - -
Lan6g0617 253 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Lan6g0617 253 MobiDBLite consensus disorder prediction 48 66 - -
Lan6g0617 253 Pfam C2H2-type zinc finger 78 103 - -
Lan6g0617 253 Gene3D Classic Zinc Finger 50 130 - -
Lan6g0617 253 MobiDBLite consensus disorder prediction 33 71 - -
Lan6g0617 253 SUPERFAMILY beta-beta-alpha zinc fingers 74 105 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0617 Lan-Chr6 5413973 5416371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0617 8 199 C2H2 Transcription Factor Family AT1G10480 35.323 1.25e-17 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan6g0617 zf-C2H2_6 4.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0617 - - gmx:100799857 320.472