Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0616 ATGCCGGGGAATCGGTCCAAGTCGGAGAAGCACGACGGTGCGATGCAGCTCCGACGGGACCCGTATGAGGTTCTCGGCGTCTCACGCAACTCCACTGATCAGGAAATCAAAACCGCTTATCGAAAAATGGCTCTTAAATACCATCCTGACAAGAATGCTAATGATCCTAAAGCAGCTGATATGTTTAAAGAGGTTACCTTTTCTTATAACATCTTATCAGATCCTGATAAACGCCGTCAGTACGACTCAGCTGGATTCGAGGCTGTTGAATCAGATAGCCAAGAGTTGGAGTTGGACCTTTCAAGTTTGGGTGCTGTGAATACAATGTTTGCAGCTCTTTTTAGTAAACTTGGTGTTCCAATTAAGACAACTGTATCTGCTACTATTTTAGAAGAGGCACTCAATGGTGCAGTGACCATTCGTCCACTTCCATTGGGGCATTTTATATCTAAAAGGGTTGAGAAGCAATGTGCACACTTCTATTCAGTTACAATAACAGAAGAGGAAGCTCGAGCTGGATTTGTTTGTCGAGTGCAATCATCAGACAAAAGCAAGTTCAAGTTATTATATTTTGACCAGGAAGACAATGGTGGATTAAGTCTTGCGCTCCAGGAAGACAGTGCAAAAACGGGAAAGGCTACCTCCGCTGGAATGTATTTTCTTGGGTTTCCTGTTTATCGGTTGGATCAAACATTGAACTCAATAGCTGCTGCAAAGGATCCTGATACATCATTTTTCAGAAAGCTGGATGGGTTCCAGCCCTGTGAACTAACAGAATTGAAGGCTGGCACCCATGTGTTTGCTGTTTATGGTGACAACTTTTTCAAAAGTGCAAGCTATACAATAGAAGCTTTGTGTGCTGCACCTTTTAGTGAAGAAAAAGAAAATTTAAGAAACATAGAATCTCAAATTTTGTCTAAAAGGGCAGAAATGTCAAAGTTTGAGACAGAATACCGAGAGGTTTTGGCGCAATTTACAGAGATGACAAGCAGATATGCGCATGAAATGCAAGCCATTGATGAGCTTCTAAAACAAAGAAATGAAATACATGCATCATACACTGTCGCTCCTTTAAAACGAAGTTCAAGTAAGAGCAGGATCAAAAGTTCTTCCAAGGAGGCAAAAGAAGATGACCAAGTAAGAGAGAAGAGAAATATCAGAGATCGTCCAAGGAAGAAGAAATGGTATAACATCCACTTGAGAGTTGATAAGAGAAAGGCCTGCTAA 1227 0.414 MPGNRSKSEKHDGAMQLRRDPYEVLGVSRNSTDQEIKTAYRKMALKYHPDKNANDPKAADMFKEVTFSYNILSDPDKRRQYDSAGFEAVESDSQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATILEEALNGAVTIRPLPLGHFISKRVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDQEDNGGLSLALQEDSAKTGKATSAGMYFLGFPVYRLDQTLNSIAAAKDPDTSFFRKLDGFQPCELTELKAGTHVFAVYGDNFFKSASYTIEALCAAPFSEEKENLRNIESQILSKRAEMSKFETEYREVLAQFTEMTSRYAHEMQAIDELLKQRNEIHASYTVAPLKRSSSKSRIKSSSKEAKEDDQVREKRNIRDRPRKKKWYNIHLRVDKRKAC* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0616 408 Pfam DnaJ domain 20 82 IPR001623 -
Lan6g0616 408 SUPERFAMILY Chaperone J-domain 18 88 IPR036869 -
Lan6g0616 408 MobiDBLite consensus disorder prediction 360 390 - -
Lan6g0616 408 PRINTS DnaJ domain signature 22 40 IPR001623 -
Lan6g0616 408 PRINTS DnaJ domain signature 40 55 IPR001623 -
Lan6g0616 408 PRINTS DnaJ domain signature 57 77 IPR001623 -
Lan6g0616 408 PRINTS DnaJ domain signature 77 96 IPR001623 -
Lan6g0616 408 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 1 407 - -
Lan6g0616 408 ProSiteProfiles dnaJ domain profile. 20 85 IPR001623 -
Lan6g0616 408 MobiDBLite consensus disorder prediction 366 385 - -
Lan6g0616 408 MobiDBLite consensus disorder prediction 1 28 - -
Lan6g0616 408 MobiDBLite consensus disorder prediction 1 18 - -
Lan6g0616 408 CDD DnaJ 20 74 IPR001623 -
Lan6g0616 408 PANTHER DNAJ DOMAIN-CONTAINING PROTEIN-RELATED 1 407 - -
Lan6g0616 408 ProSitePatterns Nt-dnaJ domain signature. 62 81 IPR018253 -
Lan6g0616 408 SMART dnaj_3 19 77 IPR001623 -
Lan6g0616 408 Coils Coil 297 317 - -
Lan6g0616 408 Gene3D DnaJ domain 4 103 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0616 Lan-Chr6 5390542 5395247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0616 18 83 C2H2 Transcription Factor Family AT1G74250 42.254 5.70e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0616 - - gmx:100800929 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0617 17 5208617 5214399 Lan6g0616 6 5390542 5395247 LSH