Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0611 ATGGCGTTAACGACTTCGAGACCGGTAGCGAAGGTTCTATGGGGAGAACTAGAAGAAGACGATGGAGAGGATCTGGATTTCTTATTACCGCCTAAGCAGGTAATCGGTCCTGACCATAACGGTATAAAGAAGGTGATAGAATACAAGTTCAATGATGAAGGGAACAAGGTTAAGATCACCACCACCACTCGCACGCGTAAACTCGCCAACGCGCGTCTCAGCAAACGCGCCGTTGAGAGGCGTTCGTGGCCTAAGTTTGGTGACGCTGTTCATGAGGATGTTGGTAGTAGACTCACTATGGTTTCTACCGAAGAGATCGTTCTTGAACGACCTAAGCCTCTTGGCTCCAAGAATGAGGAACCAAAGGCTGCTGGAGACCCATTAGCACAATTTCAGAAAGGTGCTGTTCTTATGGTCTGTAGGACTTGTGGGAAGAAGGGTGACCACTGGACTTCAAAATGTCCATACAAGGATCTTGCCGCACCATCTGAGGGATTCGTTGACAAGCCTCCAACATCTGATGCCGCAGCTGGTGCTCCTGGTGCAGCAAAGGGAGCATATGTGCCTCCTGGAATGAGAGCTGGGGCAGAGAGGGGGGCTGGATCGGATATGAGGCGTAGGAATGATGAAAATTCTGTAAGGGTCACCAACCTCTCGGAGGACACAAGAGAGCCTGATTTGCTTGAACTCTTCCGTCCGTTTGGGGCCGTGAGCAGAGTCTATGTTGCTATTGATCAAAAAACTGGCATGAGCAGAGGATTTGGCTTTGTTAATTTTGTTATCAGGGAAGATGCACAAAGAGCTATTAACAAACTCAATGGATATGGCTATGACAGTCTCATCCTCAGAGTTGAATGGGCCACTCCCAGGACAACCTAG 879 0.4892 MALTTSRPVAKVLWGELEEDDGEDLDFLLPPKQVIGPDHNGIKKVIEYKFNDEGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAVHEDVGSRLTMVSTEEIVLERPKPLGSKNEEPKAAGDPLAQFQKGAVLMVCRTCGKKGDHWTSKCPYKDLAAPSEGFVDKPPTSDAAAGAPGAAKGAYVPPGMRAGAERGAGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVIREDAQRAINKLNGYGYDSLILRVEWATPRTT* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0611 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Lan6g0611 292 MobiDBLite consensus disorder prediction 168 211 - -
Lan6g0611 292 CDD eIF3G 40 158 IPR024675 -
Lan6g0611 292 SUPERFAMILY RNA-binding domain, RBD 197 291 IPR035979 GO:0003676
Lan6g0611 292 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 9 292 - -
Lan6g0611 292 PIRSF Transl_init_eIF-3_RNA-bind 4 292 IPR017334 GO:0003743|GO:0005737|GO:0005852
Lan6g0611 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 278 IPR000504 GO:0003723
Lan6g0611 292 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 11 291 IPR017334 GO:0003743|GO:0005737|GO:0005852
Lan6g0611 292 CDD RRM_eIF3G_like 212 287 IPR034240 -
Lan6g0611 292 Gene3D - 183 292 IPR012677 -
Lan6g0611 292 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 9 292 - -
Lan6g0611 292 SMART rrm1_1 212 285 IPR000504 GO:0003723
Lan6g0611 292 Pfam Eukaryotic translation initiation factor 3 subunit G 33 159 IPR024675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0611 Lan-Chr6 5355931 5358102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0611 1 292 Eukaryotic Initiation Factors Gene Family AT3G11400 69.040 1.34e-157 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0611 K03248 - gmx:100818725 504.982