Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0601 ATGCATTGGGTAAAGGTTCACTCTCAAATCCATCAGAGCAATGGTGCTATCACAAGCCCCCCAATCCTCTCTCCATCTTATTCATCTTCAATTTCTTCTTCTGCTGGGAATAAAATAAGCCCTGCAATTCTTTTCATGATAGTGATTTTAGCTGTTGTATTTTTCATCTTGGGTGCCCTTCACTTGCTTGTTAGATTTCTCACAAAGCACAGATCTTCCTCTTCATCAATTTCTCAATCCAATAGGTACAATCACATGTCTGAATCTGATGCTTACCAAAGACAATTACAGCAACTATTCCATCTTCATGATTCAGGCTTAGATCAGGCTTTCATAGATGCTCTTCCAGTTTTCCTTTACAAAGAGATTATAGGGTTGAAAGAGCCATTTGATTGTGCAGTTTGCCTTTGTGAGTTTTTGGAAAAAGACAACCTCAGATTGCTTCCAACTTGCAATCATGCTTTCCACATTCACTGCATAGACACATGGTTGTTGTCTAATTCAACTTGTCCTCTCTGTAGAGGGACTCTTTATGCACCGGGCTACTCCTTTGAGAACCCGATTTTCGACTTCGAGGGTCTAAATGAGGAAGATGGGGGTTCAGGAAGTGGTGGGGGAGGAACTGCTTTTGTTAACAAACCTGCAGAGAATCACATAATGAGTGGGAAAAGGGTGTTCTCTGTTAGGCTTGGAAAGTTCAGAAGCTCAAATAATGGAGATGTGGTAGAAAGAGTTGACGGAGAGAGTAGTAGCAATATTGGTAATTTGGATGTAAGAAGATGCTATTCAATGGGGTCTTTTCAGTATGTGGTTGCTGATTCAGATTTGAGAGTGGCTTTATGTCCTCATAGAGGTGATGGTGGTAGCAGCAGTAGTATGAGACATATCAAAGGAAGAGCAGGCACAATTGGAAATTTCTCCAATGATAAGGATATTGAGGACAAAAAAATCAACATTGCAAGGAAAGGTGAAAGTTTTTCTGTTTCCAAGATTTGGCAATGGTCTAGGAAGGATAAGTTAACAAGTTCATCAGAGACAAATTTCAATAATTCCACTGTCACTGCAACTTTGCCTTGGATGAATAAAGCCAGAGGTACATGA 1101 0.4015 MHWVKVHSQIHQSNGAITSPPILSPSYSSSISSSAGNKISPAILFMIVILAVVFFILGALHLLVRFLTKHRSSSSSISQSNRYNHMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFLYKEIIGLKEPFDCAVCLCEFLEKDNLRLLPTCNHAFHIHCIDTWLLSNSTCPLCRGTLYAPGYSFENPIFDFEGLNEEDGGSGSGGGGTAFVNKPAENHIMSGKRVFSVRLGKFRSSNNGDVVERVDGESSSNIGNLDVRRCYSMGSFQYVVADSDLRVALCPHRGDGGSSSSMRHIKGRAGTIGNFSNDKDIEDKKINIARKGESFSVSKIWQWSRKDKLTSSSETNFNNSTVTATLPWMNKARGT* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0601 366 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Lan6g0601 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 5 359 - -
Lan6g0601 366 SMART ring_2 132 173 IPR001841 -
Lan6g0601 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 179 IPR013083 -
Lan6g0601 366 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 359 - -
Lan6g0601 366 CDD RING-H2_PA-TM-RING 131 174 - -
Lan6g0601 366 Pfam Ring finger domain 131 174 IPR001841 -
Lan6g0601 366 SUPERFAMILY RING/U-box 111 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0601 Lan-Chr6 5266292 5268257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0601 33 344 C3H Transcription Factor Family AT2G18650 38.529 3.37e-55 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0601 - - gmx:100805154 484.182