Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0595 ATGATCCGAAACATAAACGGGTCGGATCGCCGGGTTTTAACATTCCCAGCGGTTCATCCCTGCGAGGATATTTCTCTTTCTACCCTTTTATCTTCCCTTATCACTCTCTCTCATACTATTTCCAATTTCAAATGCAAATTCTTCTCCTGCAATAAACGAAACGCTAGAAAGATTATTTATTTGGTTCAGCTTCTTCAACCCTTTTTCCAAGAGATCCTAGAAAATGAATCGGGTCTTATATCGGGTTCGGGTTCTGCGACCCTTTGTTTATCGGAGCTCCACATAACCTTCCAGAAGCTTCTTTTTTTACTGGAAGATCTTACCCGGGAAGGTGCCCGGCTAAGGATGTTAATGGAGTCGAGTCGGGTCGCGAATCAGTTTCGGGTTTTGTCTAGATCCGTGGCTACAGCCTTGGATGTTATCTCTTTTGGTTCTGTTGAGGTGGAAATGAAAGAGCAGGTTGAGTTGCTTATGAACCAAGCAAGGAAGGGCAAGTTTGAGGTTGAACCCAATGATAAACGGGCCATCATGGTTGTTATGGAAGCTTTGACCCGGTTTGAGAACCGGTTCGACCCGGATGAGGGTGATGTGAGATGGGTTCTAGATCATATTGGGGTTAGAACATGGAGTGAGTGTAACAAAGAGGTGAAGTTTTTGGATAGTGAATATGGGTTTGAGGGGTTTAATGAGGGAAGTAGAAAGGTGGGTTTTTTATGTAGTTTGATGGCGTTAATGAGTTATTGTAGGTGTTTGTTTATGGAAGTTGTTGAAGAAGGTATGAAAAAATGTGATAAGGTTGGAGAGAGTAGCATTGAGAGCGAGATTGGGATGGTTCTGAGTTGCATAAACTCTGATGATTTTAGATGTCCAATCTCATTGGAGTTGATGAGTGATCCAGTGACCATAGAGACAGGTCATACCTATGATCGTTGTTCAATTCTCAAATGGTTCACAAGTGGGAATTTGATATGTCCCAAGACAGGTAAGAGGCTTGGAAACATTGAATTGGTACCTAACTTGGTGCTGAGGAGGTTGATTCAGCAATATTGCTATGCCAATAGCATTCCTGTTGCTGATCTTGGTCGTCGGAATCGCGATATCATTAGGATTGTGCAGCCTGGAAGTTTGGCACAAGAGGAAGCAATGAAAATGGTGGCTGGTTCTCTATGTGGCATGCTTGAGAATGGAGTTGTTGCAGAGAAGAACCGTGCTGCATTTGAGATGAGGCTTCTTTCCAAAACAAGCATTTTTAATAGGTCTTGTTTGGTGGAAGCTGGTTCAGTCCCTCTTTTGTTGAAGTTGTTGTCATCAAGGGACTCATTAGCACAAGAGAATGCCATTGCAGCCCTTTTGAATCTTTCAAAATACCCTAAGAGCAGAGCTATGATAGTTGAGAATTGGGGTTTAGAATCAATTGTTGCTGTCTTAAAGAAGGGGCTAAAGATCGAAGCTCGTCAGCATGCTGCTGCAGTGTTGTTCTACCTTGCTTCAAATGACAGGTATAGGAAAGTGATAGGAGAGGAGCCAGATGCAATTCCATCATTGATCAGGTTGATCAAAGATGGCTCCGACCGAGCCAAAAAGAATGGATTGGTTGCATTGTTTGGCCTCCTAACGCACCAACCTGAGAATCAGAAGAGGGTGCTTGAAGCTGATGCAGTTTCTTTATTGATTAACATCATTAAAGAATGTGAAAAGGAAGAGCTTGTCACAGATTCACTTGCAGTTCTAGCAATTGTGGCAGAGAAAGGTGAAGGAGCAGCAGCAATCCTTCACTGTGGAGCCTTGCCTGTAGCTCTTGAAATTTTGAGATCTTCAAGTTCAAGAGTGGGGAAGGAGCATTGTGTGACCTTATTGCTTTCTCTATCAAAAAATGGTGGACCAGATGTGGTTGCTTATTTAGTAAAGAGCTCTTCTCTTATGGGATCTCTGTATTCCCAACTCAGTGAAGGCACATCTCGGGCGAGCAAGAAGGCCAGTGCTCTAATCAGGATCCTCCATGATTTTTATGAAAGGAGGTCCTCTGGTTTCAAGGTTTCAGTTATTCCACGTGAACAATTCATTGACGTATGGTAA 2076 0.4297 MIRNINGSDRRVLTFPAVHPCEDISLSTLLSSLITLSHTISNFKCKFFSCNKRNARKIIYLVQLLQPFFQEILENESGLISGSGSATLCLSELHITFQKLLFLLEDLTREGARLRMLMESSRVANQFRVLSRSVATALDVISFGSVEVEMKEQVELLMNQARKGKFEVEPNDKRAIMVVMEALTRFENRFDPDEGDVRWVLDHIGVRTWSECNKEVKFLDSEYGFEGFNEGSRKVGFLCSLMALMSYCRCLFMEVVEEGMKKCDKVGESSIESEIGMVLSCINSDDFRCPISLELMSDPVTIETGHTYDRCSILKWFTSGNLICPKTGKRLGNIELVPNLVLRRLIQQYCYANSIPVADLGRRNRDIIRIVQPGSLAQEEAMKMVAGSLCGMLENGVVAEKNRAAFEMRLLSKTSIFNRSCLVEAGSVPLLLKLLSSRDSLAQENAIAALLNLSKYPKSRAMIVENWGLESIVAVLKKGLKIEARQHAAAVLFYLASNDRYRKVIGEEPDAIPSLIRLIKDGSDRAKKNGLVALFGLLTHQPENQKRVLEADAVSLLINIIKECEKEELVTDSLAVLAIVAEKGEGAAAILHCGALPVALEILRSSSSRVGKEHCVTLLLSLSKNGGPDVVAYLVKSSSLMGSLYSQLSEGTSRASKKASALIRILHDFYERRSSGFKVSVIPREQFIDVW* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0595 691 Pfam U-box domain 285 354 IPR003613 GO:0004842|GO:0016567
Lan6g0595 691 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Lan6g0595 691 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 356 IPR013083 -
Lan6g0595 691 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 4 679 - -
Lan6g0595 691 Gene3D - 377 675 IPR011989 -
Lan6g0595 691 PANTHER U BOX DOMAIN-CONTAINING 4 679 - -
Lan6g0595 691 SUPERFAMILY ARM repeat 385 666 IPR016024 -
Lan6g0595 691 CDD RING-Ubox_PUB 287 329 IPR045210 -
Lan6g0595 691 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Lan6g0595 691 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 468 IPR000225 GO:0005515
Lan6g0595 691 SUPERFAMILY RING/U-box 285 357 - -
Lan6g0595 691 Pfam Armadillo/beta-catenin-like repeat 418 454 IPR000225 GO:0005515
Lan6g0595 691 SMART arm_5 541 582 IPR000225 GO:0005515
Lan6g0595 691 SMART arm_5 498 539 IPR000225 GO:0005515
Lan6g0595 691 SMART arm_5 456 497 IPR000225 GO:0005515
Lan6g0595 691 SMART arm_5 583 624 IPR000225 GO:0005515
Lan6g0595 691 SMART arm_5 414 455 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0595 Lan-Chr6 5216968 5219592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0595 1 691 U-box Gene Family AT1G60190 45.286 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0595 - - gmx:100795816 887.871