Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0580 ATGTCAACACTGAACCATCTTTTTGATCTTCCAGAACAGATATGTTATGTACAATGTGGATTCTGCACCACAATTTTGATGGTAAGTGTCCCATGCAGCAGTATGTCAATGGTGGTTACAGTGAGATGTGGGCACTGCACAAGCCTCCTCTCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTACACCTTTTAGCATCTCTTAGCCATCTTGAGCCAAAAGAAAGTAGTCCAGAAGAGGATATAAACAAGACTTTGAACAGCTATAATGCTTCCATGATGACTTATTCTGATTGTGAGGAAGAGGATGTGATTCCAATTAACAATGTTGTGAATAAACCTCCAGAAAAGAGACAAAGAACACCATCAGCTTATAACCGCTTCATCAAGGATGAGATCAAAAGGCTAAAGGCTGAAAACCCTGACATGACCCACAAGGAAGCTTTCAGTACTGCTGCAAAGAATTGGGCCAATTTCCCTCCAACTCAGTGCAAAGGGGATGATGAAAACTGTAGCCAAACAGAGCCACTTCTGGATCTAGACTCACATGTGGACCCTAATGATGCTGAGGTCAATGAAGAAGGTCAAGGTTTCCGTGGAAGAAAGATTCCAAGGAATTCCATCTTGGGAAGGATGCCATTTGAATGA 648 0.4182 MSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSSMSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASLSHLEPKESSPEEDINKTLNSYNASMMTYSDCEEEDVIPINNVVNKPPEKRQRTPSAYNRFIKDEIKRLKAENPDMTHKEAFSTAAKNWANFPPTQCKGDDENCSQTEPLLDLDSHVDPNDAEVNEEGQGFRGRKIPRNSILGRMPFE* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0580 215 MobiDBLite consensus disorder prediction 166 215 - -
Lan6g0580 215 CDD HMG-box 120 163 - -
Lan6g0580 215 Pfam YABBY protein 11 163 IPR006780 GO:0007275
Lan6g0580 215 Gene3D High mobility group box domain 109 166 IPR036910 -
Lan6g0580 215 PANTHER PROTEIN YABBY 6-RELATED 1 175 IPR006780 GO:0007275
Lan6g0580 215 SUPERFAMILY HMG-box 109 162 IPR036910 -
Lan6g0580 215 MobiDBLite consensus disorder prediction 181 200 - -
Lan6g0580 215 PANTHER AXIAL REGULATOR YABBY 4 1 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0580 Lan-Chr6 5106403 5108907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0580 2 215 C2C2-YABBY Transcription Factor Family AT1G23420 58.772 3.89e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lan6g0580 YABBY 1.4e-63 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0580 K25796 - gmx:100779415 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0693 18 12181018 12183092 Lan6g0580 6 5106403 5108907 LSH