Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0573 ATGGAGGAAATGTACGGAGTGCCGTCATCATCGATGGCAGATTACGCTGACAAGCCCATCATGACGCCGGAAAATCTGATCTTTCCGGCAGACTATCACAGCTTCCTCATGTCCTCCTCCTCCGCCCGGATTCCCATGTTCGGATCCGACAATCTCCTATCCTCCGCCGGAATTCAACGGCAGCAGGAACAACAACAGGACCAGTATGAGGTCAACACCTCCACGGTGATGAAAGCCAGAATCGCTTCTCACCCTCACTACCCTCGCCTCCTCCAAGCTTATATCGATTGCCAGAAGGTAGGGGCACCTCCAGAAATAGCGGGTTTGTTAGAAGAAATTCAGCGAGAAAATGACCTGTGTTGTAAGAGGAACGTTGTTTCCACGTGTTTTGGAGCCGATCCCGAGCTTGACCATTTCATGGAAACATACTGTGACATGCTGGTGAAGTATAAATCAGACCTGGCTCGCCCTTTTGATGAAGCAACTAGCTTCCTTAACAGCATAGAAATGCAGCTCAGTCATCTCTGTACTGGTGCTAATTATGTTCCTACCCTTAATTCTGATGATGGAGGAGTGTCTTCAGACGAATATTTTAGTACGGGAGATGGTGATGTTCAAGATGGGCAATCAAGGGGTGAAGATAATGATCTTAAGGATAAGCTTTTACGTAAGTTTGGGAGTCACATTGGCACTTTGAAATTGGAGTTCTCTAAAAAGAAAAAGAAGGGTAAGCTACCAAAGGAAGCAAGACAAACCTTGCTACAGTGGTGGAATCTTCACTACAAATGGCCTTACCCAACTGAAGCTGATAAGATTGATTTGGCTAAGACAACAGGACTAGACCCGAAGCAAATAAACAATTGGTTTATTAATCAAAGAAAGCGTCATTGGAAACCATCTGAGAATATGCAGTTTTCTATGATGGAAAATCTCACTGGGCGTTTCCAAGCTGATGAATGA 960 0.451 MEEMYGVPSSSMADYADKPIMTPENLIFPADYHSFLMSSSSARIPMFGSDNLLSSAGIQRQQEQQQDQYEVNTSTVMKARIASHPHYPRLLQAYIDCQKVGAPPEIAGLLEEIQRENDLCCKRNVVSTCFGADPELDHFMETYCDMLVKYKSDLARPFDEATSFLNSIEMQLSHLCTGANYVPTLNSDDGGVSSDEYFSTGDGDVQDGQSRGEDNDLKDKLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNLHYKWPYPTEADKIDLAKTTGLDPKQINNWFINQRKRHWKPSENMQFSMMENLTGRFQADE* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0573 319 SUPERFAMILY Homeodomain-like 237 308 IPR009057 -
Lan6g0573 319 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 2 36 318 - -
Lan6g0573 319 MobiDBLite consensus disorder prediction 196 216 - -
Lan6g0573 319 Pfam KNOX2 domain 130 176 IPR005541 GO:0003677|GO:0005634
Lan6g0573 319 Pfam ELK domain 216 237 IPR005539 GO:0003677
Lan6g0573 319 SMART KNOX1_2 75 119 IPR005540 GO:0003677|GO:0005634
Lan6g0573 319 SMART ELK_2 216 237 IPR005539 GO:0003677
Lan6g0573 319 ProSitePatterns 'Homeobox' domain signature. 274 297 IPR017970 GO:0000981|GO:0006355
Lan6g0573 319 SMART KNOX2_2 126 177 IPR005541 GO:0003677|GO:0005634
Lan6g0573 319 Gene3D - 235 309 - -
Lan6g0573 319 CDD homeodomain 248 300 IPR001356 GO:0003677
Lan6g0573 319 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 36 318 - -
Lan6g0573 319 Pfam Homeobox KN domain 256 295 IPR008422 GO:0003677|GO:0006355
Lan6g0573 319 ProSiteProfiles 'Homeobox' domain profile. 236 299 IPR001356 GO:0003677
Lan6g0573 319 Pfam KNOX1 domain 77 118 IPR005540 GO:0003677|GO:0005634
Lan6g0573 319 ProSiteProfiles ELK domain profile. 216 236 IPR005539 GO:0003677
Lan6g0573 319 SMART HOX_1 238 303 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0573 Lan-Chr6 5023994 5035773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0573 1 319 Homeobox Transcription Factor Family AT1G23380 64.759 8.31e-138 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lan6g0573 KNOX2 5.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0573 - - gmx:100794719 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0699 18 12247006 12254017 Lan6g0573 6 5023994 5035773 LSH