Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0565 ATGACGACCCGTTTCAAGAAGAACAGGAAGAAGCGAGGCCACGTCAGCGCCGGTCACGGTCGTATCGGGAAGCATCGTAAGCATCCCAGCGGTCGAGGTAACGCCGGAGGAATGCACCACCACCGGATCCTGTTCGACAAATACCATCCCGGTTACTTCGGGAAAGTGGGTATGCGTTACTTCCACAAGCTCCGTAACAAGTTCTATTCCCCCATCGTCAACATAGACAAGATCTGGTCCCTTGTTCCCAAAGAGGTTAAGGATAATGCCACCAAGGATAAGGTCCCTTTGATTGATGTTACACAGTTCGGATACTTTAAGGTTTTGGGGAAAGGTGTTTTGCCTGAGAACCAGCCTATTGTTGTTAAGGCCAAGCTCGTGTCTAAGATTGCTGAGAAGAAGATTAAGGAAGCTGGTGGTGCTGTTGTTCTTACTGCTTAG 441 0.4921 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPSGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYSPIVNIDKIWSLVPKEVKDNATKDKVPLIDVTQFGYFKVLGKGVLPENQPIVVKAKLVSKIAEKKIKEAGGAVVLTA* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0565 146 SUPERFAMILY Ribosomal proteins L15p and L18e 6 145 IPR036227 -
Lan6g0565 146 MobiDBLite consensus disorder prediction 1 35 - -
Lan6g0565 146 ProSitePatterns Ribosomal protein L15 signature. 107 139 IPR001196 GO:0003735|GO:0005840|GO:0006412
Lan6g0565 146 MobiDBLite consensus disorder prediction 1 37 - -
Lan6g0565 146 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 29 143 IPR021131 -
Lan6g0565 146 Hamap 50S ribosomal protein L15 [rplO]. 1 145 IPR030878 GO:0003735|GO:0006412|GO:0015934
Lan6g0565 146 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 1 146 - -
Lan6g0565 146 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 146 - -
Lan6g0565 146 Gene3D - 58 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0565 Lan-Chr6 4967411 4967996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0565 1 146 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 87.671 7.89e-93 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0565 K02900 - csv:101221117 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0577 17 4802739 4803329 Lan6g0565 6 4967411 4967996 LSH
Lan18g0711 18 12387057 12387672 Lan6g0565 6 4967411 4967996 LSH