Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0562 ATGGAGGAAGCACTAAGGGTTCTCAACGGCATGCCTCCGATTCCAGAACCCAACTTGCAAGACACCATTATCACCACCGACTACCACCGCGGCAAGAAATCCTCCGCCGCCAACAAGAGAGCCTTGCGAGAGAACGGTTCTTCTGCTGCTCCCTCCACCGGTGGAGCCCTGAGGTACCGCGGAGTTAGGCGCAGACCGTGGGGCCGTTACGCGGCGGAAATACGAGACCCTCAGTCGAAAGAGCGGCGCTGGCTTGGCACTTTTGACACGGCGGAGGAAGCTGCTTGTGCCTACGACTGCGCCGCCCGTGCCATGCGCGGCCTTAAAGCTCGTACTAATTTTGTTTACCCAACTTCACCACCTTCTCCCGCCACTGAATTTTGTCACTTCAATCTCCCAAAAAACCCTCACCCACAACAGCAACAACACTTGAACACAATTTCACCCTTTTCAGCTTCACCTACCCATCACCACCAAGACCCTTCTTCTTCCCTTCACATGCTTCTCTTTCGCGATTTCCTCAATTCTTCTTCTAATCATCACTTTCACAATTACAACAACAATGTCACTTCTGCTTCAACCCCATTTGTGAACTGTTATGCTAATAGTGCTAGTGTTAATGCTAATAATATCACTCGTGGTGCAGTTGAAAACTGTTATGGTAACAAAACCTATACTAAAGCTGATGATGAAAATGAGGACTTGGAATTTTATGACTCTGGGTTATTGGAAGAAATAGTTCACAGGTTCTTGCCAAAATCAAGGACGAAGAAATGTGAAACTCCGCAGAAAATTGCGGAGACTAATTTCTCTAACCCAGTTTGTTCTGATAATGTGTTACTTTCCAATGCACAGTGCTATGAAGAGATGAAGAGTGAGCTTCCCAGGAACAATGGTTTTGGTTGTGTAGCCTCTTTTGATTATCACCAAGGTTATCCCACGCAGCAATGTGGCACTTTCGACAATGGATTTAACGTGAATGCTGTGCAAGCTGTGCCTCCTCTTGGGAATGAACAAATCATGATGAATCATGCTGAGTACACTTCCATCATGGAAGATATTTTTCCGTACCCTGATTTTCTCAATGCTTTTTCACTCAGGGTGCAAAATGCTTAG 1116 0.4642 MEEALRVLNGMPPIPEPNLQDTIITTDYHRGKKSSAANKRALRENGSSAAPSTGGALRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPPSPATEFCHFNLPKNPHPQQQQHLNTISPFSASPTHHHQDPSSSLHMLLFRDFLNSSSNHHFHNYNNNVTSASTPFVNCYANSASVNANNITRGAVENCYGNKTYTKADDENEDLEFYDSGLLEEIVHRFLPKSRTKKCETPQKIAETNFSNPVCSDNVLLSNAQCYEEMKSELPRNNGFGCVASFDYHQGYPTQQCGTFDNGFNVNAVQAVPPLGNEQIMMNHAEYTSIMEDIFPYPDFLNAFSLRVQNA* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0562 371 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Lan6g0562 371 MobiDBLite consensus disorder prediction 31 55 - -
Lan6g0562 371 Pfam AP2 domain 58 107 IPR001471 GO:0003700|GO:0006355
Lan6g0562 371 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 233 371 - -
Lan6g0562 371 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 231 - -
Lan6g0562 371 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 233 371 - -
Lan6g0562 371 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 231 - -
Lan6g0562 371 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Lan6g0562 371 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Lan6g0562 371 SUPERFAMILY DNA-binding domain 58 115 IPR016177 GO:0003677
Lan6g0562 371 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Lan6g0562 371 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Lan6g0562 371 CDD AP2 58 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0562 Lan-Chr6 4938852 4940167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0562 57 264 AP2-EREBP Transcription Factor Family AT1G24590 44.651 1.83e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan6g0562 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0562 - - lang:109332560 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0575 17 4790035 4791132 Lan6g0562 6 4938852 4940167 LSH
Lan18g0717 18 12446898 12448045 Lan6g0562 6 4938852 4940167 LSH