Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0555 ATGGAATTCGAAGATCAAGAGGAACCAGAAGAGTTGTGTTTCGACCCATTGGGAAACTCGACACGGGTTAAAATATCCGGTTCAGTTGAACCCATAATGGTTCCTCAACCGCTTAGGAGTAGCAACAAGGCGAGGTACAGGGAGTGTCTGAAGAACCACGCCGTCAGCCTCGGCGGCAACGCTCTTGACGGCTGCGGAGAGTTCATGCCTGCCGGAATAGAAGGAACCCTCGACGCCCTCAAATGCGCCGCCTGCAACTGCCACCGCAATTTCCACCGCAAGGAAACCGACACCACCGCCATCGTCACAGGTGCAGATCCTTTCTTCCTAACTCATCACCATCAACACCACCAGCCACCACCCGCACATTTCGCGGCGTACTACCGTTCCCCGGCAGGGTACCTTCACATGGGAGGAGGCCTTCACCATAGAGGAGCTGCGCCGGGTGGAACGCTAGCTCTGCCGTCAACCTCCGGCGCTGACGGAGGGTGTGGGACTCAGAGCACGAGGGAGGATCAAGAAGACATGTCGAACCCTATGAGTGGTGGAGATGGGAGTGGAGGGTCGAAGAAGAGGCACAGGACAAAGTTCAGTCTAGAGCAGAAAGACAAGATGCTTGAATTTGCAGAGAGGCTAGGTTGGAAAATTCAGAAGCATGATGAGAGTTTGATCCAAGAATTCTGTAACGAGAACGGGATCAAGCGTCACGTTCTTAAGGTTTGGATGCATAACAACAAGCACACTCTTGGTAAGAAGCCCTAG 762 0.5354 MEFEDQEEPEELCFDPLGNSTRVKISGSVEPIMVPQPLRSSNKARYRECLKNHAVSLGGNALDGCGEFMPAGIEGTLDALKCAACNCHRNFHRKETDTTAIVTGADPFFLTHHHQHHQPPPAHFAAYYRSPAGYLHMGGGLHHRGAAPGGTLALPSTSGADGGCGTQSTREDQEDMSNPMSGGDGSGGSKKRHRTKFSLEQKDKMLEFAERLGWKIQKHDESLIQEFCNENGIKRHVLKVWMHNNKHTLGKKP* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0555 253 MobiDBLite consensus disorder prediction 146 195 - -
Lan6g0555 253 Pfam ZF-HD protein dimerisation region 44 96 IPR006456 -
Lan6g0555 253 Gene3D - 174 251 - -
Lan6g0555 253 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 37 252 - -
Lan6g0555 253 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 252 - -
Lan6g0555 253 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 45 95 IPR006456 -
Lan6g0555 253 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 46 95 IPR006456 -
Lan6g0555 253 MobiDBLite consensus disorder prediction 160 184 - -
Lan6g0555 253 SUPERFAMILY Homeodomain-like 176 251 IPR009057 -
Lan6g0555 253 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 190 246 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0555 Lan-Chr6 4842631 4843625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0555 1 249 ZF-HD Transcription Factor Family AT4G24660 47.619 3.34e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lan6g0555 ZF-HD_dimer 3.3e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0240 17 1637070 1639330 Lan6g0555 6 4842631 4843625 LSH
Lan18g0723 18 12556719 12557968 Lan6g0555 6 4842631 4843625 LSH