Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0553 ATGGCTGATTGCCTGGACCCTGATACCTCAAACCTTCTTTGTTCAGAGGACAACAGTACATGTTTTGATGATGTTTTAGAATATAATGATGTTGCTGGTTTTGGAATCTCAACTTTCTGGGCCCACACAAACCTTAACTCTGTCAATCAATGTCACAGTTTTGTGTTTCAGAGTGAGGAAACTGTGAGGGTTATGATTGAGAGGGAGAGGGAGCATTTACCAAGGGATGATTACTTGAAGAGACTGAGGAGTGGGGACTTGGATATAAGTGTTAGGAGAGAGGCTATTGATTGGATTTGCAAGAGTCATGCTTATTTTGGCTTTGGATATTTGACCTTTTGTCTCACTGTGAACTACTTTGATCGCTTCCTATCTGTATATGAATTACCGAGAGATAAAAGTTGGACCGGGCAATTGCTAGCGGTTGCATGCTTATCAATTGCAGTTAAAATGGATGAGATTAAAGTGCCTCAATCTTTAGATTTGCAGGTTGGAGAACCAAAGTTTTTCTTTGAGGGTAAAACCATTCAAAGAATGGAACTATTGGTTTTAGGTACATTGAGATGGAAGATGCAAGCTTTAACTCCATGCTCCTTCTTAGAGTACTTCCTCGGCAAGATCACTTGTGAACAGCAACAAGCAGAGCCATACATTTCAAAATCAATACAGCTCATACTCAGCACAATCAAGGGTATTGACTTCCTGGAATTCAAGCCTTCTGAAATTGCAGCAGCAGTGGCAATTTATGTTTCAAAGGAAATTGATGCAAAAGATATTAATAATGGCATAGCTTGTTCTTCCATTGTTGAGGAGGAGAGAGTTCTAAAGTGTGTCGAATTAATCAAAGATATGAATGTTTCTGCGAATTTGGGCAATAACTCTTCTGCACTATTTGTGCCCCAAAGCCCTGTTGGGGTATTGGATACTGGATACTTAAGTTTTAAGAGTGATGAATTAACAGTTGGGTCATGTCCAAATACTTCATATAATAGTTCAAATACTAAGATGTGCAACAAATCAGATGGCCCTTCAACTAATGGGGCTTTTACAAGTGATGAAATATGA 1065 0.3897 MADCLDPDTSNLLCSEDNSTCFDDVLEYNDVAGFGISTFWAHTNLNSVNQCHSFVFQSEETVRVMIEREREHLPRDDYLKRLRSGDLDISVRREAIDWICKSHAYFGFGYLTFCLTVNYFDRFLSVYELPRDKSWTGQLLAVACLSIAVKMDEIKVPQSLDLQVGEPKFFFEGKTIQRMELLVLGTLRWKMQALTPCSFLEYFLGKITCEQQQAEPYISKSIQLILSTIKGIDFLEFKPSEIAAAVAIYVSKEIDAKDINNGIACSSIVEEERVLKCVELIKDMNVSANLGNNSSALFVPQSPVGVLDTGYLSFKSDELTVGSCPNTSYNSSNTKMCNKSDGPSTNGAFTSDEI* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0553 354 CDD CYCLIN 92 184 IPR013763 -
Lan6g0553 354 Pfam Cyclin, N-terminal domain 62 191 IPR006671 -
Lan6g0553 354 ProSitePatterns Cyclins signature. 92 123 IPR006671 -
Lan6g0553 354 MobiDBLite consensus disorder prediction 329 354 - -
Lan6g0553 354 PANTHER CYCLINS 45 340 IPR039361 -
Lan6g0553 354 Gene3D - 75 192 - -
Lan6g0553 354 Pfam Cyclin, C-terminal domain 195 288 IPR004367 -
Lan6g0553 354 SUPERFAMILY Cyclin-like 52 191 IPR036915 -
Lan6g0553 354 SMART cyclin_7 97 185 IPR013763 -
Lan6g0553 354 PANTHER CYCLIN-D4-1-LIKE 45 340 - -
Lan6g0553 354 Gene3D - 65 280 - -
Lan6g0553 354 SUPERFAMILY Cyclin-like 177 283 IPR036915 -
Lan6g0553 354 SMART Cyclin_C_2 194 302 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0553 Lan-Chr6 4821285 4823954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0553 57 262 Core Cell Cycle Gene Families AT5G65420 56.731 3.23e-84 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0553 K18810 - gmx:100794010 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0725 18 12583063 12585732 Lan6g0553 6 4821285 4823954 LSH
Lan6g0553 6 4821285 4823954 Lan18g0037 18 269483 271987 PCT
Lan18g0037 18 269483 271987 Lan6g0553 6 4821285 4823954 PCT