Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0549 ATGGTTTTACTTCGACAGGGCATGCAGCAATTTCGAAATTACTATAACTCGGAAGTTCAAATGAGGAGTAGTAACTTTCCTCGGGCATGCATCTCAGATACATACAATTACATTATCTCAAAGCCGAGATCCAAGGTAGAAAACAAAGAAACGGCTGCCAAGAAACACAGTGATGCAGAAAAAAGACGTAGAGTTCGAATCAACGAACAATATAATGCCCTTCGTAGGATCCTCCCCAGCATATTCAACCAGCACCCAAATTCAAGCAGTGTATTATGCATTGGAAATGAACCCAACCGTGTGAAAACGGACAAGGCATCGATACTGGCAGAAACAATCAAGCAATTGAGGAAGCTGGAGAAAAGTGTGCCAAAAATGCTAATTCCTAGTTGGGAAGATGAATTTACTACAGAACAATGTAACAATCAAGAGCAGCAGGGTCTAGTGAAAGTCACATTGAGTTGTGAGGATAGACCGGGATTGATGTTAGCCATAGAGAGGGCGGTGGGGTCAGTGAATGCCAAGTTGGTAAATGCTGACCTGGTGACAGTGGGTGGAAGAGCCAAATTTGTGTTGTGGGTGCAAGTTTTGGTGGCTGGAAAAGAAGGTTTGAGGATGCTAAGGAGAACTCTTAAGGTTGTAATGCACAAACCAGTCTTTAAGATGCAGCGTTTTCCTCAATAG 684 0.4298 MVLLRQGMQQFRNYYNSEVQMRSSNFPRACISDTYNYIISKPRSKVENKETAAKKHSDAEKRRRVRINEQYNALRRILPSIFNQHPNSSSVLCIGNEPNRVKTDKASILAETIKQLRKLEKSVPKMLIPSWEDEFTTEQCNNQEQQGLVKVTLSCEDRPGLMLAIERAVGSVNAKLVNADLVTVGGRAKFVLWVQVLVAGKEGLRMLRRTLKVVMHKPVFKMQRFPQ* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0549 227 Pfam Helix-loop-helix DNA-binding domain 55 119 IPR011598 GO:0046983
Lan6g0549 227 PANTHER TRANSCRIPTION FACTOR BHLH30 10 85 IPR045847 GO:0003700|GO:0006355
Lan6g0549 227 PANTHER TRANSCRIPTION FACTOR BHLH30 98 225 IPR045847 GO:0003700|GO:0006355
Lan6g0549 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 119 IPR011598 GO:0046983
Lan6g0549 227 SUPERFAMILY ACT-like 147 215 IPR045865 -
Lan6g0549 227 Gene3D - 46 126 IPR036638 GO:0046983
Lan6g0549 227 PANTHER TRANSCRIPTION FACTOR BHLH131 98 225 - -
Lan6g0549 227 PANTHER TRANSCRIPTION FACTOR BHLH131 10 85 - -
Lan6g0549 227 CDD ACT_UUR-ACR-like 151 195 - -
Lan6g0549 227 SMART finulus 57 125 IPR011598 GO:0046983
Lan6g0549 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 127 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0549 Lan-Chr6 4796568 4798885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0549 52 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 32.727 9.07e-17 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan6g0549 HLH 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0549 - - lang:109349151 450.669