LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan6g0545	ATGGCGAGGGAGAAGATTCAGATTAAGAAAATCGATAACATCACAGCGAGGCAAGTGACTTTCTCTAAGAGACGCAAAGGGTTGTTCAAAAAAGCTAAGGAGCTCTCAGTTCTATGTGATGCTGATATTGCTCTCATTATCTTCTCTTCTACTGGGAAGCTTTTTGAGTACTCCAGCTCAAGCATGAAAGAAATACTTGAAAGACATCATTTGCACTCAAAGAATCTTTCAAAAATGGAACAACCATCTCTCGAGTTGCAGCTAGTTGAAAACAGCAACTACACTAGATTGAGAAAGGAAGTTGCTGAGAAAAGCCATCAATTAAGGCAAATGAGAGGAGAGGATCTTCATGGTTTAGATATCGATGAATTACAACAATTGGAAAGATCTCTAGAAGATGGACTGGGGCGTGTTATACAAAAGAAGGGAGAGAAGATTATGAATGAGATCACTGATCTCCAAACAAAGGGAATGCGTTTGATGGAAGAGAACGAGCGACTAAAGCAACATGTGGAGAACATAACTAATGGACAAAGGCATGAGTGTGAGAATTTAGTTGGTGAGGAAGATCAATCTTCGGGGTCTGTCACTAACATTTGCAACTCCACTGGATCTCCCCGTGACTACTCTGATAGCTCTAACACCTCCCTTAAGTTAGGGCTACCATACCAAGGCTGA	678	0.4115	MAREKIQIKKIDNITARQVTFSKRRKGLFKKAKELSVLCDADIALIIFSSTGKLFEYSSSSMKEILERHHLHSKNLSKMEQPSLELQLVENSNYTRLRKEVAEKSHQLRQMRGEDLHGLDIDELQQLERSLEDGLGRVIQKKGEKIMNEITDLQTKGMRLMEENERLKQHVENITNGQRHECENLVGEEDQSSGSVTNICNSTGSPRDYSDSSNTSLKLGLPYQG*	226

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan6g0545	225	MobiDBLite	consensus disorder prediction	186	225	-	-
	Lan6g0545	225	Coils	Coil	150	170	-	-
	Lan6g0545	225	Pfam	K-box region	92	171	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lan6g0545	225	Gene3D	-	14	109	IPR036879	GO:0003677\|GO:0046983
	Lan6g0545	225	MobiDBLite	consensus disorder prediction	188	225	-	-
	Lan6g0545	225	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Lan6g0545	225	ProSiteProfiles	K-box domain profile.	87	177	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lan6g0545	225	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Lan6g0545	225	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Lan6g0545	225	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Lan6g0545	225	PANTHER	MADS-BOX PROTEIN SVP ISOFORM X1	1	222	-	-
	Lan6g0545	225	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Lan6g0545	225	CDD	MADS_MEF2_like	2	75	IPR033896	GO:0000977\|GO:0045944
	Lan6g0545	225	SUPERFAMILY	SRF-like	3	79	IPR036879	GO:0003677\|GO:0046983
	Lan6g0545	225	Coils	Coil	94	114	-	-
	Lan6g0545	225	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	222	-	-
	Lan6g0545	225	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Lan6g0545	225	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan6g0545	Lan-Chr6	4741385	4745491	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan6g0545	1	225	MADS-box Gene Family	AT2G22540	67.220	3.11e-107	306

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Lan6g0545		K-box	6.7e-17	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan6g0545	-		-	gmx:100789126	357.066

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan17g0570	17	4687623	4692823	Lan6g0545	6	4741385	4745491	LSH