LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan6g0536	ATGGATTCAAGCCCAACAGAGAAAATCTATGTTGCTGTTGGTAATGATGTGCAGGATGGATTAAAGACTTTAGCTTGGGCTCTCAACAAATGGAATTCTCAACCAATTTCCATTGTTATTCTCCATGTCACTTACAATATTTCCATGGATTATGTTTATACACCATTTGGGAAACTTCCAGCAAGTTCTGTGAATGATGAGAAACTTGAAGTTCTCAGGAAATATGAGGAAGAGAAAATCAACAAGTTGCTTTCTAAATATGTTGCTTTGTGTGGCAAGGTTCCTGTAGAAATTTTTGAAGTAGAGAAGTTTGATGAACCTATGCAAAAGCACATCATAGACTTGATCATGGGTCTAGGAATGACCAAATTGGTCATGGGATTTTCATTCATGAAGCCATCCTTGAAATCAAAAGGTGCCATGAGTGCATTGTTCTATGTTGATCAGCACAAGCCTGGTTTCTGTGAACTGTTCATTATTTGCGGAGGGAAACAAGTGTTCCTCAGAGGAAAGAATGATGAGAAAATCACAGAGGATGATAATGAAGTCATGGTTGAAAAAATGAAAGATAAGATAACTTTCAAAGATTGGCTAGACAAAATGTTCAATGATAAAACCAATAGCTCCCCAGATAGAATTGCATCAACATCCACAACAAATTTGAAGTCCCATGTGACCCAAACCCAGTGGGAATTATATCTCCAAGAAATTGATACCTATTATCAAGAATTGCTGTCTTTAGATTTGTTTGAAGAAGGTAGCAACCAAGACAATGACAACTCGGAGATTAGGCCAATTGAGCCAGATGTCATTGAAAGTAATAGTTCTAACAAGAGTACTGCTGCAGAAAAAATTGAGATCCTAAAGAGTAAATTGGAGGAAGCTCACAAGACCATTCAATTGAAGAGGAAAGAAGCCAAGGAAAATATAGAGAGACAAGAAAAAGCTCAATGGACAATCTGTTTATGCAACACTAGGATTGAAGAACTTGAGTCTAAGATAAATGAAGAAGTGAGTGTAAGGGAAGAGCTAAAGAAGGAAATAGAAGCAGAAAAAGAACAAGCATATGAGATGAGAATGGATTTTGAAGAGAGCAAGAGGAGGGTAAGTTCACTATCAGAACTACAATGTGAGCTCTCAAACATGCTTCAAATTTCTACATTAGCAAAGTCAAGAGCTGAGACACAACTAGAGAGAGCAGTGGAAGAGAGAACAAGGATGGTGAGGGAAATAGAAGAGCTTAGAAGACAAAGAGATGTGTTGAATAGAAGGATTGAGTTTTGTAAGCAAAAAGATGCTATTGGAATGGCTGCAAGGTTGAGTGAGACATGTTGTAGTTTTAGAGAGTACACTGAGGAAGAACTAAGGTTGGCTACAGAGAATTATTCAGAAAGGTTGAGATTGAAATCTAGTGGTGATTTGACCAATGTTTATAGAGGACGCATTAATCATTTCACTGTTGCAATCAAGATGCTTAACTCTTTTGCTTCTCTGTCTCAACAAGATTTCCTATATAAGGTGAGGATTCTAGGTGATATTAGGCATCCACATCTAGTGTCCATGGTGGGCTTATGCAAAGATCCCAAATGTATAGTCATGGAATACATGCACAATGGAAGCTTACAAGACATGCTATTTTCTAAGAGAAGAAATCGGGCTTTACGTTGGCACGACCGAATACGAATAATGACAGAAGTTTGCACGGGCTTGGGCTTTCTCAATACAGCTCAGTCCAGGCCCATTATTCATTGCCATTTGACCCCATCCAGCGTCCTCCTAGACCGCAATCTTGTTGCAAAAATCACGGGCTTTGGGCTTCATGAGTGTCACGATGAGGAATGCAACATTGAGTCAGATATCCGGGCCGTGGGGATTTTATTGATTCATCTTTTGACTGGAAGGAACTGGGCCGGGCTTGTAGATGGGCCCATGACAGTGGATTTGAGTAGAGAGGCTGTGGTTAGTGTTCTTGATGAGATGGCTGGACAATGGCCATTGGATCTAACAGAAGAACTTGTGGGCCTAGCAATGAGGTGCATGTCCATTAAAAGTAAGCCCAAGTCAGAATTGAGCATTGCAAGGGTCATAGAGGAACTGAATGAGATTAGAAGAAAGGGTGATGAAATAGTTGCAAGAGAAGGAAGAAGAGTAATCATTGGTGGAGGTGTAGATAGAGAGGGCCCTTCTGATGTTCCTGCTGTTTTCCTTTGCCCTATACTTCAGGATGTAATGAAAAACCCACATGTAGCAGCAGATGGATTTTCATATGAGGTGGAAGCAATAGAACAATGGTTGAATTCAGGGCATGATACATCACCTATGACTAACTTAAGGCTCAATCACACATTCCTTACCCCTAATCACACCCTTCGTTCCCTCATTCAGGATTGGCGAACCAACACATCAAACTAA	2412	0.3997	MDSSPTEKIYVAVGNDVQDGLKTLAWALNKWNSQPISIVILHVTYNISMDYVYTPFGKLPASSVNDEKLEVLRKYEEEKINKLLSKYVALCGKVPVEIFEVEKFDEPMQKHIIDLIMGLGMTKLVMGFSFMKPSLKSKGAMSALFYVDQHKPGFCELFIICGGKQVFLRGKNDEKITEDDNEVMVEKMKDKITFKDWLDKMFNDKTNSSPDRIASTSTTNLKSHVTQTQWELYLQEIDTYYQELLSLDLFEEGSNQDNDNSEIRPIEPDVIESNSSNKSTAAEKIEILKSKLEEAHKTIQLKRKEAKENIERQEKAQWTICLCNTRIEELESKINEEVSVREELKKEIEAEKEQAYEMRMDFEESKRRVSSLSELQCELSNMLQISTLAKSRAETQLERAVEERTRMVREIEELRRQRDVLNRRIEFCKQKDAIGMAARLSETCCSFREYTEEELRLATENYSERLRLKSSGDLTNVYRGRINHFTVAIKMLNSFASLSQQDFLYKVRILGDIRHPHLVSMVGLCKDPKCIVMEYMHNGSLQDMLFSKRRNRALRWHDRIRIMTEVCTGLGFLNTAQSRPIIHCHLTPSSVLLDRNLVAKITGFGLHECHDEECNIESDIRAVGILLIHLLTGRNWAGLVDGPMTVDLSREAVVSVLDEMAGQWPLDLTEELVGLAMRCMSIKSKPKSELSIARVIEELNEIRRKGDEIVAREGRRVIIGGGVDREGPSDVPAVFLCPILQDVMKNPHVAADGFSYEVEAIEQWLNSGHDTSPMTNLRLNHTFLTPNHTLRSLIQDWRTNTSN*	804

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan6g0536	803	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	729	803	IPR013083	-
	Lan6g0536	803	Gene3D	Transferase(Phosphotransferase) domain 1	447	709	-	-
	Lan6g0536	803	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED	5	798	-	-
	Lan6g0536	803	SUPERFAMILY	RING/U-box	726	800	-	-
	Lan6g0536	803	Pfam	Protein tyrosine and serine/threonine kinase	471	612	IPR001245	GO:0004672\|GO:0006468
	Lan6g0536	803	Pfam	U-box domain	731	801	IPR003613	GO:0004842\|GO:0016567
	Lan6g0536	803	Coils	Coil	327	365	-	-
	Lan6g0536	803	SMART	Ubox_2	734	797	IPR003613	GO:0004842\|GO:0016567
	Lan6g0536	803	CDD	RING-Ubox_WDSUB1_like	735	776	-	-
	Lan6g0536	803	ProSiteProfiles	Protein kinase domain profile.	463	703	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan6g0536	Lan-Chr6	4681056	4686205	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan6g0536	3	799	U-box Gene Family	AT5G65500	48.947	0.0	754

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Lan6g0536		PK_Tyr_Ser-Thr	2.6e-25	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan6g0536	-		-	gmx:100786771	1190.64

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