Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0536 ATGGATTCAAGCCCAACAGAGAAAATCTATGTTGCTGTTGGTAATGATGTGCAGGATGGATTAAAGACTTTAGCTTGGGCTCTCAACAAATGGAATTCTCAACCAATTTCCATTGTTATTCTCCATGTCACTTACAATATTTCCATGGATTATGTTTATACACCATTTGGGAAACTTCCAGCAAGTTCTGTGAATGATGAGAAACTTGAAGTTCTCAGGAAATATGAGGAAGAGAAAATCAACAAGTTGCTTTCTAAATATGTTGCTTTGTGTGGCAAGGTTCCTGTAGAAATTTTTGAAGTAGAGAAGTTTGATGAACCTATGCAAAAGCACATCATAGACTTGATCATGGGTCTAGGAATGACCAAATTGGTCATGGGATTTTCATTCATGAAGCCATCCTTGAAATCAAAAGGTGCCATGAGTGCATTGTTCTATGTTGATCAGCACAAGCCTGGTTTCTGTGAACTGTTCATTATTTGCGGAGGGAAACAAGTGTTCCTCAGAGGAAAGAATGATGAGAAAATCACAGAGGATGATAATGAAGTCATGGTTGAAAAAATGAAAGATAAGATAACTTTCAAAGATTGGCTAGACAAAATGTTCAATGATAAAACCAATAGCTCCCCAGATAGAATTGCATCAACATCCACAACAAATTTGAAGTCCCATGTGACCCAAACCCAGTGGGAATTATATCTCCAAGAAATTGATACCTATTATCAAGAATTGCTGTCTTTAGATTTGTTTGAAGAAGGTAGCAACCAAGACAATGACAACTCGGAGATTAGGCCAATTGAGCCAGATGTCATTGAAAGTAATAGTTCTAACAAGAGTACTGCTGCAGAAAAAATTGAGATCCTAAAGAGTAAATTGGAGGAAGCTCACAAGACCATTCAATTGAAGAGGAAAGAAGCCAAGGAAAATATAGAGAGACAAGAAAAAGCTCAATGGACAATCTGTTTATGCAACACTAGGATTGAAGAACTTGAGTCTAAGATAAATGAAGAAGTGAGTGTAAGGGAAGAGCTAAAGAAGGAAATAGAAGCAGAAAAAGAACAAGCATATGAGATGAGAATGGATTTTGAAGAGAGCAAGAGGAGGGTAAGTTCACTATCAGAACTACAATGTGAGCTCTCAAACATGCTTCAAATTTCTACATTAGCAAAGTCAAGAGCTGAGACACAACTAGAGAGAGCAGTGGAAGAGAGAACAAGGATGGTGAGGGAAATAGAAGAGCTTAGAAGACAAAGAGATGTGTTGAATAGAAGGATTGAGTTTTGTAAGCAAAAAGATGCTATTGGAATGGCTGCAAGGTTGAGTGAGACATGTTGTAGTTTTAGAGAGTACACTGAGGAAGAACTAAGGTTGGCTACAGAGAATTATTCAGAAAGGTTGAGATTGAAATCTAGTGGTGATTTGACCAATGTTTATAGAGGACGCATTAATCATTTCACTGTTGCAATCAAGATGCTTAACTCTTTTGCTTCTCTGTCTCAACAAGATTTCCTATATAAGGTGAGGATTCTAGGTGATATTAGGCATCCACATCTAGTGTCCATGGTGGGCTTATGCAAAGATCCCAAATGTATAGTCATGGAATACATGCACAATGGAAGCTTACAAGACATGCTATTTTCTAAGAGAAGAAATCGGGCTTTACGTTGGCACGACCGAATACGAATAATGACAGAAGTTTGCACGGGCTTGGGCTTTCTCAATACAGCTCAGTCCAGGCCCATTATTCATTGCCATTTGACCCCATCCAGCGTCCTCCTAGACCGCAATCTTGTTGCAAAAATCACGGGCTTTGGGCTTCATGAGTGTCACGATGAGGAATGCAACATTGAGTCAGATATCCGGGCCGTGGGGATTTTATTGATTCATCTTTTGACTGGAAGGAACTGGGCCGGGCTTGTAGATGGGCCCATGACAGTGGATTTGAGTAGAGAGGCTGTGGTTAGTGTTCTTGATGAGATGGCTGGACAATGGCCATTGGATCTAACAGAAGAACTTGTGGGCCTAGCAATGAGGTGCATGTCCATTAAAAGTAAGCCCAAGTCAGAATTGAGCATTGCAAGGGTCATAGAGGAACTGAATGAGATTAGAAGAAAGGGTGATGAAATAGTTGCAAGAGAAGGAAGAAGAGTAATCATTGGTGGAGGTGTAGATAGAGAGGGCCCTTCTGATGTTCCTGCTGTTTTCCTTTGCCCTATACTTCAGGATGTAATGAAAAACCCACATGTAGCAGCAGATGGATTTTCATATGAGGTGGAAGCAATAGAACAATGGTTGAATTCAGGGCATGATACATCACCTATGACTAACTTAAGGCTCAATCACACATTCCTTACCCCTAATCACACCCTTCGTTCCCTCATTCAGGATTGGCGAACCAACACATCAAACTAA 2412 0.3997 MDSSPTEKIYVAVGNDVQDGLKTLAWALNKWNSQPISIVILHVTYNISMDYVYTPFGKLPASSVNDEKLEVLRKYEEEKINKLLSKYVALCGKVPVEIFEVEKFDEPMQKHIIDLIMGLGMTKLVMGFSFMKPSLKSKGAMSALFYVDQHKPGFCELFIICGGKQVFLRGKNDEKITEDDNEVMVEKMKDKITFKDWLDKMFNDKTNSSPDRIASTSTTNLKSHVTQTQWELYLQEIDTYYQELLSLDLFEEGSNQDNDNSEIRPIEPDVIESNSSNKSTAAEKIEILKSKLEEAHKTIQLKRKEAKENIERQEKAQWTICLCNTRIEELESKINEEVSVREELKKEIEAEKEQAYEMRMDFEESKRRVSSLSELQCELSNMLQISTLAKSRAETQLERAVEERTRMVREIEELRRQRDVLNRRIEFCKQKDAIGMAARLSETCCSFREYTEEELRLATENYSERLRLKSSGDLTNVYRGRINHFTVAIKMLNSFASLSQQDFLYKVRILGDIRHPHLVSMVGLCKDPKCIVMEYMHNGSLQDMLFSKRRNRALRWHDRIRIMTEVCTGLGFLNTAQSRPIIHCHLTPSSVLLDRNLVAKITGFGLHECHDEECNIESDIRAVGILLIHLLTGRNWAGLVDGPMTVDLSREAVVSVLDEMAGQWPLDLTEELVGLAMRCMSIKSKPKSELSIARVIEELNEIRRKGDEIVAREGRRVIIGGGVDREGPSDVPAVFLCPILQDVMKNPHVAADGFSYEVEAIEQWLNSGHDTSPMTNLRLNHTFLTPNHTLRSLIQDWRTNTSN* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0536 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 729 803 IPR013083 -
Lan6g0536 803 Gene3D Transferase(Phosphotransferase) domain 1 447 709 - -
Lan6g0536 803 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 5 798 - -
Lan6g0536 803 SUPERFAMILY RING/U-box 726 800 - -
Lan6g0536 803 Pfam Protein tyrosine and serine/threonine kinase 471 612 IPR001245 GO:0004672|GO:0006468
Lan6g0536 803 Pfam U-box domain 731 801 IPR003613 GO:0004842|GO:0016567
Lan6g0536 803 Coils Coil 327 365 - -
Lan6g0536 803 SMART Ubox_2 734 797 IPR003613 GO:0004842|GO:0016567
Lan6g0536 803 CDD RING-Ubox_WDSUB1_like 735 776 - -
Lan6g0536 803 ProSiteProfiles Protein kinase domain profile. 463 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g0536 803 Coils Coil 390 431 - -
Lan6g0536 803 ProSiteProfiles U-box domain profile. 730 803 IPR003613 GO:0004842|GO:0016567
Lan6g0536 803 Coils Coil 278 316 - -
Lan6g0536 803 PANTHER OS02G0152300 PROTEIN 5 798 - -
Lan6g0536 803 SUPERFAMILY Protein kinase-like (PK-like) 445 683 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0536 Lan-Chr6 4681056 4686205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0536 3 799 U-box Gene Family AT5G65500 48.947 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lan6g0536 PK_Tyr_Ser-Thr 2.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0536 - - gmx:100786771 1190.64