Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0526 ATGGCTTGTAAGATGAGGAAACAGGTTTTCTTCCTATGGTGGTTTGGAATGGCTGCACAACTCTGCTTCTTGCTCGGTGTGTCTGCTAAGAAGACATCATTTAGAAGAAATATAAGGGAGATCAACAGTAGCCTAATTCACTTTCCATTCACTGTGAATACACGACATCATAAGCAGGTGGTAATTGATAATGGTATCGTTTCCGTTAAGCTGGCAAACCCAAAGGGCTATGTCATTGGAATATCATATTCAGGAATTGACAATCTGCTTGATACTAAACTTAAAGAAAACAATAGAGGGTACGTGGATGTTGTTTGGAATAAAACTGGAAAAGAAGCTAATACCTTTCAGAGAGTCCATGGGACACGTTTTTCAGTCATAACAGCGGATGAGAATATGGTGGAGGTTTCATTTTCAAGAAGATGGACATTTTCTATGGGAGGCTCAAGTGTCCCCATAAACATAGATAAAAGGTATATATTAAGAAAAAACGATTCAGGATTTTATTCATACATAATATTTAATCGTCTACCAGGATTTATCGGAACGAAGATATCTCAAATTAGATCTGTTTTCAAACTTCATTCAAGGTTCCACTACATGGCCATATCAGATACTAGACAAAGGAACATGCCAACAACTAAAGATAGATCTACAGGTAAAACATTGGCATATCCTGAAGCTGTTCGCATAACTCGTCCATCTAACCCACGATTTATGGGAGAGGTGGATGACAAGTACCAATATTCAACTGAGAACCAAGATAACACTCTTCATGGTTGGATTACCAAAGATTCTAAAGCAACCGTGGGTATTTGGACTATAACACCGAGTAATGAGTTCCGTAATTGTGGTCCCATCAAACAAGACCTCACTTCTCACTTAGGCCCAACATTCCTCAATATGTTCATGAGCACACACTATGCTGGAAAGAATGTAGCAATGTCATTTGGACAAGGAGAGACTTATAAAAAGGTTTTCGGTCCTTTTTATACTTATCTTAACTCTGCTTCAAGTGATGCTCAATTTCGATCTCTGTGGTCAGATGCTGTACAACAGAGATCCAAAGAAGTCCAAAGCTGGCCTTATGTTTTCCCTCAATCAAAAGATTTCATTCCACCCAATCAAAGGGGAACAGTAGCAGGATGCTTTGAAATCCAAGATAGGTTTGTAGCTATAGAGGGATCTCAACCTGCTGTGAATGCTTACATTGGTCTAGCTTTGCCTGGAGATGCAGGATCGTGGCAAGAAGAAAGTAAGGGTTATCAATTCTGGACTCGAACTGATGAGAATGGACACTTTGCAATAACAAATATTGTGCCTGGAAAATATAATTTGTATGGATGGGTTCATGGCTTTATTGGTGATTACAAATATGAGGCTATAATCACCATCACACCAGGATGTGCCATCACCTTGGACTCACTTGTATATATTCCTCCAAGAAATGGTCCCACCCTTTGGGAAATTGGCATCCCAGATCGTTCAGCTGCAGAATTCTATATACCATACCCTCAGCCTAGGCTCCGTAACAACTTATACAAGAATGATGACAAAGAAAAGTTTAGGCAATACGGGTTGTGGGCACGTTACTCTGATTTATATCCGCTTAATGATCTTGTCTACACTGTTGGTGTTAGTGACTATAGAAAGGATTGGTTTTTTGCTCATGTTAGCAGGAGCATAGGTAATACTTATCAGCCAACCACATGGCAGATTATATTTGAACTTCAAAATAACACATTGAGAGGAGGAGACTACACGCTACAATTGGCCTTGGCATCAGCCAGTGGAGCCGAAGTGCAGGTTCGGCTCAATGATCCAGGTGCTTATTCTCCCCTCTTCACAACAGGGTTAATAGGTGACGACAATGCCATAGCAAGACACGGAAACCACGGATTATACTGGTTCTATACCATAAATATACCTAGCAGTCATTTGGTGAAAGGAACTAACACCATCTATCTGAGGCAAGCAAGAGCTGCAAGTCCTTTTGTAGGAGTTATGTATGATTATATCCGCTTAGAAAGTCCTGCACCTCTTTGTGCTTCATTGTGTATGTAA 2064 0.4016 MACKMRKQVFFLWWFGMAAQLCFLLGVSAKKTSFRRNIREINSSLIHFPFTVNTRHHKQVVIDNGIVSVKLANPKGYVIGISYSGIDNLLDTKLKENNRGYVDVVWNKTGKEANTFQRVHGTRFSVITADENMVEVSFSRRWTFSMGGSSVPINIDKRYILRKNDSGFYSYIIFNRLPGFIGTKISQIRSVFKLHSRFHYMAISDTRQRNMPTTKDRSTGKTLAYPEAVRITRPSNPRFMGEVDDKYQYSTENQDNTLHGWITKDSKATVGIWTITPSNEFRNCGPIKQDLTSHLGPTFLNMFMSTHYAGKNVAMSFGQGETYKKVFGPFYTYLNSASSDAQFRSLWSDAVQQRSKEVQSWPYVFPQSKDFIPPNQRGTVAGCFEIQDRFVAIEGSQPAVNAYIGLALPGDAGSWQEESKGYQFWTRTDENGHFAITNIVPGKYNLYGWVHGFIGDYKYEAIITITPGCAITLDSLVYIPPRNGPTLWEIGIPDRSAAEFYIPYPQPRLRNNLYKNDDKEKFRQYGLWARYSDLYPLNDLVYTVGVSDYRKDWFFAHVSRSIGNTYQPTTWQIIFELQNNTLRGGDYTLQLALASASGAEVQVRLNDPGAYSPLFTTGLIGDDNAIARHGNHGLYWFYTINIPSSHLVKGTNTIYLRQARAASPFVGVMYDYIRLESPAPLCASLCM* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0526 687 SUPERFAMILY Starch-binding domain-like 395 475 IPR013784 GO:0030246
Lan6g0526 687 Gene3D - 50 351 IPR014718 GO:0030246
Lan6g0526 687 SUPERFAMILY Galactose-binding domain-like 483 676 IPR008979 -
Lan6g0526 687 Pfam Polysaccharide lyase family 4, domain II 401 473 IPR029413 -
Lan6g0526 687 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 51 679 - -
Lan6g0526 687 SUPERFAMILY Galactose mutarotase-like 54 338 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lan6g0526 687 Pfam Rhamnogalacturonate lyase family 51 243 IPR010325 -
Lan6g0526 687 CDD RGL4_N 53 342 - -
Lan6g0526 687 CDD RGL4_C 488 676 - -
Lan6g0526 687 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 51 679 - -
Lan6g0526 687 CDD RGL4_M 376 476 IPR029413 -
Lan6g0526 687 Gene3D - 484 676 - -
Lan6g0526 687 Pfam Polysaccharide lyase family 4, domain III 486 675 IPR029411 -
Lan6g0526 687 Gene3D - 372 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0526 Lan-Chr6 4573298 4579555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0526 59 679 Polysaccharide Lyase AT1G09890 53.994 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0526 K18195 - gmx:100776664 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0554 17 4493165 4499666 Lan6g0526 6 4573298 4579555 LSH
Lan6g0526 6 4573298 4579555 Lan17g0733 17 6807460 6810014 PCT
Lan17g0733 17 6807460 6810014 Lan6g0526 6 4573298 4579555 PCT