Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0515 ATGGAGCTTTCACAACTTGGTTTTCTAGAGGAACTACTGGCTCCAAGAAGAGACACTTGGAATAATGCTTTATCTACTGGGTTGAATGAACTATTCCCTAGTGGTTGGAGTTTTGATTCTTTTGATGAGAATCCTTCTTTAGCTACTTTGAGTCCTTCATTTCCTCCATTCTCAACACCAATAGATCATAGATTTGAATGCCCTTATGGAAATGAAGCACCATATCCATTTGTTGATGGATTCACAATGCCAGAGCTTGATTCATCATATACAAGGAATGATGACACAGCACCACTATTACCACAACAAGATAATAATAACCCATCAATGCATGATGAAGAGCTTGGATTTTTTGGAAGTGATTACCTGAGTTTGGAAGAAAGAAATAATGGCTGCAAAGTTGAGGAACAAGCTTCAGAGGTTCCAGTTTTCAACATGGGCATTTGTGGAGAGAGAAAAACAAAATACAAGAAAGTAGAAGGGCAACCCTCAAAGAATCTCATGGCAGAAAGAAGGAGGAGGAAACGTCTCAATGATAGGCTTTCTATGCTAAGGTCCATAGTCCCTAAAATCAGCAAGATGGACAGGACTTCCATTCTTGGGGATACCATTGATTACATGAAAGAGCTTCTAGAAAGGATAGGAAAGTTGCAAGAAGAAGAAATTGAGGAGGGGAATAGTCAAATAAACATTCTGGACATTTCTAAGGACCAAAAGCCAAATGAAGGAATATTTGATGTTGAGAGGAGAGACAAGGATACTAAGATAAGCATTTGCTGTGCCACAAAGCCTGGGTTATTACTCTCAACAGTGAACACCTTAGAAGCACTGGGCCTTGAGATTCACCAGTGTGTTATAAGCAGCTTCAATGATTTCTCATTGCAAGCATCTTGCTCAGAGGTAGTTGAACAAAGGAACTGTGTTAGCCCTGAAGACATAAAGAAAGCGCTATTCAGAAATGCAGGTTATGGTGGAAGATGTCTCTAG 987 0.3972 MELSQLGFLEELLAPRRDTWNNALSTGLNELFPSGWSFDSFDENPSLATLSPSFPPFSTPIDHRFECPYGNEAPYPFVDGFTMPELDSSYTRNDDTAPLLPQQDNNNPSMHDEELGFFGSDYLSLEERNNGCKVEEQASEVPVFNMGICGERKTKYKKVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEIEEGNSQINILDISKDQKPNEGIFDVERRDKDTKISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEVVEQRNCVSPEDIKKALFRNAGYGGRCL* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0515 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Lan6g0515 328 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 328 - -
Lan6g0515 328 Pfam Helix-loop-helix DNA-binding domain 167 210 IPR011598 GO:0046983
Lan6g0515 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 221 IPR036638 GO:0046983
Lan6g0515 328 CDD ACT_UUR-ACR-like 254 295 - -
Lan6g0515 328 PANTHER - 2 328 - -
Lan6g0515 328 Gene3D - 153 227 IPR036638 GO:0046983
Lan6g0515 328 SMART finulus 167 216 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0515 Lan-Chr6 4364857 4366470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0515 152 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 68.539 4.36e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan6g0515 HLH 6.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0515 - - gmx:100806571 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0545 17 4363930 4365602 Lan6g0515 6 4364857 4366470 LSH
Lan18g0748 18 12905905 12907989 Lan6g0515 6 4364857 4366470 LSH