Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0512 ATGTCTCCACCACTGCTGGTTACGGAGGAGGAAGGGCAGAGCAAAGTCTTGTCGGCAGCATCTGCATCTTTGCAATCCTTAGACTCTTTCTCCCAAGATGGGATTGAATTGAAGGAAATAAATTATTTAGGACTGTCTGATTGCTCATCAGTGGACAGTTGTAGCCCTACTGTCCTAATCTTCTCTGATGAGAAAAAGGGGAACCTGAATTTGAAGGCCACAGAGTTGAGTCTGGGTCTTCCTGGATCGCAATCTCCCGAATGGAACACGGATCTTTACTCTTTAAGCTCAGCAAAACTTGATAAAAAGCTACTGTTCCCTTTGCTTCCTATGAAAGATGAAATCTGCTTGGCATCCCGGAAGACTGTGGTTTCAGGCAACAAAAGAGGCTTTGCCGACACCTTGGATGGGTTCCCTCAGGGAAAGTTTACTGGCAATACAGGGATGGGTCTAATGCTGTCGCCTAGATCTTCTGGAGCTCAGCCAACCACAGTGAAAGAAATTCAAAGCAATGTGTTACAAGAACGGCATTGTGCAGCTAATGGTGCTTCTATTAGTGGCAGTGCTCCCGCTCCTAAGGCACAGGTTGTTGGCTGGCCTCCTATCAGATCATTTAGGAAAAACTCAATGGCCACCACTTCAAAGAACAATGATGAAGTTGATGGAAAACCATGTCCTGCCACTCTCTTTGTGAAGGTCAGCATGGATGGTGCCCCTTATCTTAGGAAGGTAGATCTCAATAATTATACAACATACCAGGAACTATCTTCCGCCCTTGAGAAGATGTTCAGCTGTTTTACCTTAGGCCAGTGTGGTTCCCATGGAACTCCAGGAAAAGAGATGTTGAGTGAGAGCAAGCTGAGGGACCTTCTGGATGGTTCAGAATATGTGGTCACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCATGGGATATGTTCATTGACACTTGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCAATTGGCTTAGCTCCCAGGGCCATGGAAAAGTCCAAAAGCAGGAGTTAG 1047 0.4565 MSPPLLVTEEEGQSKVLSAASASLQSLDSFSQDGIELKEINYLGLSDCSSVDSCSPTVLIFSDEKKGNLNLKATELSLGLPGSQSPEWNTDLYSLSSAKLDKKLLFPLLPMKDEICLASRKTVVSGNKRGFADTLDGFPQGKFTGNTGMGLMLSPRSSGAQPTTVKEIQSNVLQERHCAANGASISGSAPAPKAQVVGWPPIRSFRKNSMATTSKNNDEVDGKPCPATLFVKVSMDGAPYLRKVDLNNYTTYQELSSALEKMFSCFTLGQCGSHGTPGKEMLSESKLRDLLDGSEYVVTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0512 348 ProSiteProfiles PB1 domain profile. 228 332 IPR000270 GO:0005515
Lan6g0512 348 SUPERFAMILY CAD & PB1 domains 225 329 - -
Lan6g0512 348 Pfam AUX/IAA family 74 339 IPR033389 -
Lan6g0512 348 Gene3D - 225 342 - -
Lan6g0512 348 PANTHER AUXIN-INDUCED PROTEIN 2 341 - -
Lan6g0512 348 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 341 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0512 Lan-Chr6 4325656 4329744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0512 232 338 B3 DNA Binding Superfamily AT4G23980 30.841 3.11e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Lan6g0512 AUX_IAA 3.5e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0512 K14484 - gmx:547502 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0544 17 4350654 4356498 Lan6g0512 6 4325656 4329744 LSH
Lan18g0750 18 12949744 12954008 Lan6g0512 6 4325656 4329744 LSH