Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0504 ATGAATCTGTGGACTGACGACAACTCCTCCGTCATGGAGGCTTTCATTACCACCACCTCTTCCTCCGACCTCTCCTCTCTCTGGCCACCACTTACACCGTCACTTCCCCAACAACCACACCACCACCAACAACCGCAACAACAACCTCTTTTCAATCAAGACACCCTCCAACAACGACTTCAAGCTCTCATCGAGGGCCACGCCACTCATATATGGACATATGCCATATTCTGGCAATCATCTTATGAATATTCCTCTTCCTCCACTCTCCTCGCGTGGGGCGATGGTTACTACAAAGGCGATGAAGACAAATCCAAACCCAACAACAAGAACAAGAAGGCTTCATCTTCTGAACAAGAACACCGGAAGAAAGTGCTTCGTGAACTCAATTCTCTCATCTCAGGTACCTCAACCGAAAACGATACGGTCGATGAAGAAGTCACCGACACCGAGTGGTTCTTCCTTGTTTCCATGACTCAGTCCTTTGCTAACGGCTCTGCGTTACCGGGTCAGTCTTTCTTTAACTCGACTCCGGTTTGGGTCTCCGGTTCAGACCGTTTGGCTGGGTCAGGGTGCGAAAGAGCCAGACAGGCGCAGGTTTTTGGGCTTCAAACCATGGTTTGTATACCGGCGGCGAATGGGGTTGTTGAACTGGGGTCCACTGAAATGGTTTTCCAAAACCCTGATCTAATGAACAAGGTAAGATTCTTGTTCAATTTCAATAACAACAGCAATAATCATATGGGTTCATGGCCCTTCACCGCTAGCATCGCCACTACAACCACGGATCAAGGTGAGAACGACCCTTCTTCCCTTTGGCTCAATGATCATGAAATTAGGGATTCCGTGAATGTGAATGCAAACAACACTGTTGTTGCTCCTGCTGCTGGTAGCGTTTCTGTTTCTGTTTCTATTCCGAGCTTGAACAGTAGTCATATCAATAACAACAATCAGGTTATTCTCAAAACGACACAGCTCGATACCCCTGGTTCTAGTACCTTAACCGAAACACCAAGTGCTATTAACTTCCCTAGCAGGTCTCCTCACCAGCACCAGCAGAGCTTCTTTTCGAGGGAATTGAACTTTTCCGCTTATGGCTTTGAAGGAAATGGTGTGAAGAATGGGGGCAACCAGCATAACCATCATTCTCTGAAGCCGGAATCCGGTGAGATTTTGAGCTTTGGAGAGACTAAGAAGAGTTCTTATATCGGCACAAATGGAAATTCATCTCATTTTTTATCTGGGCAGTCTCAATTTGCTGCTGCAGCTCCTGCTGTAGAGGAGAATAGCAAGAAGAGGAGGTCCCCAACTTCGAGGAGCAGCAATGATGATGGCATGCTTTCCTTCACCTCTGGTGTTGTTTTGCCGTCTTCAACTTCGAATATGAGGTCTGGTGGTGGTGGCAGTGGTGATTCGGACCATTCAGATCTAGAGGCTTCTGTGGTGAAGGACCCTGAAAACAGTAGAGTGATGGAACCAGAAAAACGGCCCCGAAAAAGAGGGAGGAAACCGGCAAATGGCAGAGAGGAACCATTGAATCATGTTGAAGCAGAGAGGCAAAGGAGGGAGAAGCTGAACCAGAGATTCTATGCGCTTCGTGCGGTGGTTCCGAACGTGTCGAAGATGGACAAAGCATCGCTTCTCGGGGATGCCATTTCTTACATTACTGAGCTGAAATCTAAGCTTCAGAACCTTGAATCAGATAAAGATGGTTTGGAGAAGCAATTGGATACAGTGAAGCAGGAACTCGAGAAAACCACTAAAGATTCGGGTGCACCACTTCCACCTGATAAGGAATCGAAGATGTTGACTAATGTTGGAAGCAGTAAGCTGATTGATTTGGACATCGACGTGAAGATTATTGGTTGGGATGCAATGATAAGGATCCAATGTAGCAAGAAGAATCACCCTGCTGCCAGGTTGATGGCGGCTTTGATGGAATTGGAATTGGATGTGCACCATGCCAGTGTGTCAGTGGTGAATGATTTGATGATCCAACAAGCAACCGTGAAGATGGGAAGCAGGTTTTATACACAGGAACAGCTAAGTGCTGCATTGTCATCCAAATTTGGTGGTGGCCAATGA 2085 0.4695 MNLWTDDNSSVMEAFITTTSSSDLSSLWPPLTPSLPQQPHHHQQPQQQPLFNQDTLQQRLQALIEGHATHIWTYAIFWQSSYEYSSSSTLLAWGDGYYKGDEDKSKPNNKNKKASSSEQEHRKKVLRELNSLISGTSTENDTVDEEVTDTEWFFLVSMTQSFANGSALPGQSFFNSTPVWVSGSDRLAGSGCERARQAQVFGLQTMVCIPAANGVVELGSTEMVFQNPDLMNKVRFLFNFNNNSNNHMGSWPFTASIATTTTDQGENDPSSLWLNDHEIRDSVNVNANNTVVAPAAGSVSVSVSIPSLNSSHINNNNQVILKTTQLDTPGSSTLTETPSAINFPSRSPHQHQQSFFSRELNFSAYGFEGNGVKNGGNQHNHHSLKPESGEILSFGETKKSSYIGTNGNSSHFLSGQSQFAAAAPAVEENSKKRRSPTSRSSNDDGMLSFTSGVVLPSSTSNMRSGGGGSGDSDHSDLEASVVKDPENSRVMEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQNLESDKDGLEKQLDTVKQELEKTTKDSGAPLPPDKESKMLTNVGSSKLIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELELDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLSAALSSKFGGGQ* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0504 694 MobiDBLite consensus disorder prediction 419 519 - -
Lan6g0504 694 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 510 581 IPR036638 GO:0046983
Lan6g0504 694 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 509 558 IPR011598 GO:0046983
Lan6g0504 694 PANTHER MYC 31 690 IPR045084 GO:0003700|GO:0006355
Lan6g0504 694 SMART finulus 515 564 IPR011598 GO:0046983
Lan6g0504 694 Coils Coil 555 589 - -
Lan6g0504 694 MobiDBLite consensus disorder prediction 22 48 - -
Lan6g0504 694 MobiDBLite consensus disorder prediction 476 519 - -
Lan6g0504 694 CDD bHLH_AtAIB_like 506 582 - -
Lan6g0504 694 MobiDBLite consensus disorder prediction 100 122 - -
Lan6g0504 694 MobiDBLite consensus disorder prediction 440 468 - -
Lan6g0504 694 Gene3D - 501 590 IPR036638 GO:0046983
Lan6g0504 694 Pfam Helix-loop-helix DNA-binding domain 513 558 IPR011598 GO:0046983
Lan6g0504 694 MobiDBLite consensus disorder prediction 583 602 - -
Lan6g0504 694 PANTHER TRANSCRIPTION FACTOR MYC2 31 690 - -
Lan6g0504 694 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 56 238 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0504 Lan-Chr6 4247915 4250274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0504 1 691 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 52.817 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan6g0504 bHLH-MYC_N 7.2e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0504 K13422 - gmx:100776289 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0535 17 4237933 4240640 Lan6g0504 6 4247915 4250274 LSH
Lan18g0757 18 13015867 13018385 Lan6g0504 6 4247915 4250274 LSH