Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0502 ATGGCCTCTTCCGACCCATTCACCGACAAGAACACCGTGTTCCGTAAGCTCAAGTCAAAATCTGAAAATAAGATATGTTTTGATTGCAATGCAAAGAACCCAACTTGGGCTTCTGTGACCTATGGGATCTTCCTCTGCATCGATTGTTCTGCTGTTCATCGCAGCCTCGGCGTTCACATCAGCTTTGTCAGATCTACAAATTTAGACTCATGGAGTCCTGAGCAACTAAAAACGATGAGCTTTGGAGGAAATAATCGTGCACAGGTTTTCTTTAAGCAGCATGGTTGGAATGATGGTGGTAAAATAGAGGCCAAATATACATCAAGAGCTGCAGAATTATATAAACAAATACTTTCTAAGGAAGTAGCTAAAAGTATGGCTGACGAAGCAAGTTTATCATCATCTGTTGCTTCTCAGTCTCCACAAGTGGCTAATGGACTTCCTGAAGTTAGGACAAATGAATTACCAAAAGAAAATAGTCTGGGGAAGCCTGAAACGCCTGAGAGCACTTCTTCACCAAGAGCTTCACATACAATAGTTTCCAGTACAGTAAAGAAATCTATTGTTGCTAAAAAATCTGGGAAGACTGGGGGACTTGGAGCCCGGAAGCTTACTAAAAAGCCAAGTGAGTCTCTCTATGAGCAGAAGCCAGAAGAACCACCTGCTCCAGTCTCTTCCGCGACAAACAAAAATTTGCCTACTGTACCACCACAGCCATCTCGGTTTGGGTATGTAGAAAATGTCCAGTCATCTGATTTGAATTCTAGAGCTGGGGATACAGATGTGCATGGTCATGTGTCTGTACCGAAGTCATTGAGCTTCTTTGCAGACTTTGGAATGGATAGCGGTTTTCCAAAGAAGTCCGTGTTGAATTCCTCAAAAGTGCAAATTCAGGAATCTGATGAAGCAAGAAAGAAGTTCTCAAATGCTAAATCTATTTCTTCATCCCAATTTTTTGGAGATCAGAACAAAGCTGAAGATTTGGCTGCTCAAGCTACTTTGTCAAAGTTTTCAGGTAAAACTGCCATCTCTAGTGCTGATCTTTTTGGTGACTCGGACTCCTCCATTGATCTTGCTGCTAGTGACCTCATCAATCGAATATCATTCCAGGCACAAGAAGATATCTCTTCCCTTAGAAACATTGCTGGAGAGACTGGGAAGAGGCTCAGCTCCTTGGCCAACATTTTGATAACAGATCTTCAAGATCGAATACTCTAA 1218 0.4212 MASSDPFTDKNTVFRKLKSKSENKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKTMSFGGNNRAQVFFKQHGWNDGGKIEAKYTSRAAELYKQILSKEVAKSMADEASLSSSVASQSPQVANGLPEVRTNELPKENSLGKPETPESTSSPRASHTIVSSTVKKSIVAKKSGKTGGLGARKLTKKPSESLYEQKPEEPPAPVSSATNKNLPTVPPQPSRFGYVENVQSSDLNSRAGDTDVHGHVSVPKSLSFFADFGMDSGFPKKSVLNSSKVQIQESDEARKKFSNAKSISSSQFFGDQNKAEDLAAQATLSKFSGKTAISSADLFGDSDSSIDLAASDLINRISFQAQEDISSLRNIAGETGKRLSSLANILITDLQDRIL* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0502 405 MobiDBLite consensus disorder prediction 133 147 - -
Lan6g0502 405 SUPERFAMILY ArfGap/RecO-like zinc finger 12 126 IPR037278 -
Lan6g0502 405 MobiDBLite consensus disorder prediction 222 236 - -
Lan6g0502 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 405 - -
Lan6g0502 405 MobiDBLite consensus disorder prediction 133 241 - -
Lan6g0502 405 Gene3D Arf GTPase activating protein 2 141 IPR038508 -
Lan6g0502 405 SMART arf_gap_3 11 127 IPR001164 GO:0005096
Lan6g0502 405 CDD ArfGap_ArfGap2_3_like 9 124 - -
Lan6g0502 405 MobiDBLite consensus disorder prediction 163 189 - -
Lan6g0502 405 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Lan6g0502 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 405 - -
Lan6g0502 405 Pfam Putative GTPase activating protein for Arf 12 112 IPR001164 GO:0005096
Lan6g0502 405 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Lan6g0502 405 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Lan6g0502 405 PRINTS HIV Rev interacting protein signature 63 84 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0502 Lan-Chr6 4213018 4218145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0502 14 92 C2H2 Transcription Factor Family AT4G21160 46.250 5.06e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0502 K12493 K11855 gmx:100785169 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0534 17 4219544 4225553 Lan6g0502 6 4213018 4218145 LSH
Lan18g0758 18 13020627 13025254 Lan6g0502 6 4213018 4218145 LSH