Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan6g0497 | ATGGCTACTTTAGACTCTGCTCTCAGTCTCACCGTCTTTGCATCTCATCGTTTTTCCAATAACCACCGTTTCTCTCCAAAACCACTTGACTCCATAAAGTTCCACCCTTCTCTTCAAAACAACCTCTTCTTCTCTTCCAAATCTTTCTCTTTCTCTACCTCCACATCACTCTGCTTCCAATTATGTTCTGCTTTGCAAGAAGCACCATCACCAACTTCAGAGGAAAAAACAGAGCAAAATCAAACCAAGACAACAAACTTGAAGACGAAACTCTTCGTGTTCAACTTACCTTGGACTCTGTCCGCGGTAGACATCAAGGAACTTTTTTCCCAATGCGGGAACGTAACCGACGTTGAGATAATTAAGAGCAAAGATGGGAGGAGCAAAGGGTTTTGCTTTGTTACTATGGCTACAGGGGAAGAGGCTATGGACGCTGTTAACAAATTTGACTCTTATGAAATATCAGGAAGGATATTAAGAGTAGAGTTTGCGAAGAGATTTAAGAAACCTTCTCCTCTGCGTCCTCCAGGCCCCCCTCCGGGCGAAACACGCCATGTTATTTTTGCAACCAACGTTGCATGGAAAGCAAGATCTACCCATTTCAGAGATTTCATCACTGAGAATTTCAAACAACCAGTTTCAGCCAGGGTTGTCTTTGACAGTCCTACTGGAAGATCAGCTGGGTATGCATTTGCTTCTTTTCTTACGAAGGAGGATGCAGAGGCTGCCATTTCTGCTTTGGATGGGAAGGAGTTAATGGGACGGCCACTTCGCCTAAAATTCAGTGAAAGGAACGCTAAAGAAGCTGCAAGTAAACAAGACGATGATGACACTCAACTTGAAGACGATGGTGCTATTAACGCTCAACCTGAAGACGACACTGGCGACAATCAACTTATAGAATCATAA | 909 | 0.4356 | MATLDSALSLTVFASHRFSNNHRFSPKPLDSIKFHPSLQNNLFFSSKSFSFSTSTSLCFQLCSALQEAPSPTSEEKTEQNQTKTTNLKTKLFVFNLPWTLSAVDIKELFSQCGNVTDVEIIKSKDGRSKGFCFVTMATGEEAMDAVNKFDSYEISGRILRVEFAKRFKKPSPLRPPGPPPGETRHVIFATNVAWKARSTHFRDFITENFKQPVSARVVFDSPTGRSAGYAFASFLTKEDAEAAISALDGKELMGRPLRLKFSERNAKEAASKQDDDDTQLEDDGAINAQPEDDTGDNQLIES* | 303 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan6g0497 | 302 | SMART | rrm1_1 | 90 | 162 | IPR000504 | GO:0003723 | |
| Lan6g0497 | 302 | SMART | rrm1_1 | 186 | 260 | IPR000504 | GO:0003723 | |
| Lan6g0497 | 302 | CDD | RRM_SF | 91 | 162 | - | - | |
| Lan6g0497 | 302 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 89 | 166 | IPR000504 | GO:0003723 | |
| Lan6g0497 | 302 | Gene3D | - | 65 | 183 | IPR012677 | - | |
| Lan6g0497 | 302 | Gene3D | - | 184 | 288 | IPR012677 | - | |
| Lan6g0497 | 302 | MobiDBLite | consensus disorder prediction | 275 | 289 | - | - | |
| Lan6g0497 | 302 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 190 | 258 | IPR000504 | GO:0003723 | |
| Lan6g0497 | 302 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 91 | 159 | IPR000504 | GO:0003723 | |
| Lan6g0497 | 302 | MobiDBLite | consensus disorder prediction | 263 | 302 | - | - | |
| Lan6g0497 | 302 | SUPERFAMILY | RNA-binding domain, RBD | 89 | 264 | IPR035979 | GO:0003676 | |
| Lan6g0497 | 302 | PANTHER | OS02G0815200 PROTEIN | 8 | 277 | - | - | |
| Lan6g0497 | 302 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 185 | 264 | IPR000504 | GO:0003723 | |
| Lan6g0497 | 302 | PANTHER | CHLOROPLAST, PUTATIVE-RELATED | 8 | 277 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan6g0497 | Lan-Chr6 | 4154829 | 4158029 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan6g0497 | 91 | 272 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 25.126 | 7.54e-10 | 57.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan6g0497 | - | - | lang:109349094 | 528.865 |