Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0496 ATGGCATCTCTTGGAAACCCAAGAACTTGGGTTCCATACATGAACACCAAAGATTGTACTCAAGGGTTTTGTAGCTTATATTGTCCACAGTGGTGTAATGTAGTGTACCCTCCACCTCCTCCATTTGAATTCCCTGATGATGATTCAGGTCCAAACTTTTCCCCTCTAGTCATTGCAATCATTGGAATCTTGGCCAGTGCTTTTCTTCTTGTGAGTTACTATACCATAATATCTAAGTACTGCGGACGCAGAGAAGCTTCATCTTCACAAAGAGAGAGCCATGAAGCAAATGTTGAAATTCAAGACAATCATAACCTTGCACTCCATGAGCCATGGCATGTTTCAACTACTGGCTTAGATGAGGCACTGATCAAGTCCATAACAGTATGCAAATACAAAAAAGGAGATGGTTTGGTTGGAGTGACAGATTGCTTAGTTTGTCTCAGTGAGTTTCAAGATGGTGAAAGCATTAGACTCTTGCCGAAGTGTAATCATGTTTTTCATATTCCTTGCATTGACACATGGCTCAAATCTCACTCAACTTGCCCTCTATGCCGTTCTAGCATATTTACCTTCAATGCTGCAGCATTCTATGTGCCACCACCAGTGGTAGAACTCGCTTCGAGGAACGACACTTCTTCGCAAAACCATCAACATGAAGATGAGATTACAGTTGTTAGAAGAGGAAGTACTAGGTTGGATGTTGTGGAAGAAGAAATGACTATGCATGGTGATGGTAGAGAAGTTCCGAAGAATGCATTTCGCGCTTTTAGTGATTTAGGTAATTTAAGGGGAAGGAATAGTATAATTGAGATTGGAGATGAAGAAAATGAGTCCTTTAGGAGGTCAGTGTCTATGGATCATTCCTTACAAAATGTTTTTTCAGTTGCTGATATTCTGAATATGAATGAAGAGCAAGATTCACAAGTAGAAGGGTCCCCTACTACTGAAGCTGGTCCATCAAAGATTTCAAGAGGTGAAAGTAGCAAGTCTAGCTATAGAAGAAGGGTCTTGCATTGTGTATTGAGTCCAATTGAAATGAAGAGATCATTTTCCAGTGGAAGATTCTCATTTAGTAGAAATGGCAGGGGAAGGCAAGGGATTATACCTCTATGA 1116 0.405 MASLGNPRTWVPYMNTKDCTQGFCSLYCPQWCNVVYPPPPPFEFPDDDSGPNFSPLVIAIIGILASAFLLVSYYTIISKYCGRREASSSQRESHEANVEIQDNHNLALHEPWHVSTTGLDEALIKSITVCKYKKGDGLVGVTDCLVCLSEFQDGESIRLLPKCNHVFHIPCIDTWLKSHSTCPLCRSSIFTFNAAAFYVPPPVVELASRNDTSSQNHQHEDEITVVRRGSTRLDVVEEEMTMHGDGREVPKNAFRAFSDLGNLRGRNSIIEIGDEENESFRRSVSMDHSLQNVFSVADILNMNEEQDSQVEGSPTTEAGPSKISRGESSKSSYRRRVLHCVLSPIEMKRSFSSGRFSFSRNGRGRQGIIPL* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0496 371 MobiDBLite consensus disorder prediction 305 327 - -
Lan6g0496 371 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 362 IPR044675 -
Lan6g0496 371 CDD RING-H2_EL5_like 143 186 - -
Lan6g0496 371 SMART ring_2 144 185 IPR001841 -
Lan6g0496 371 Pfam Ring finger domain 143 186 IPR001841 -
Lan6g0496 371 SUPERFAMILY RING/U-box 127 192 - -
Lan6g0496 371 MobiDBLite consensus disorder prediction 305 330 - -
Lan6g0496 371 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 362 - -
Lan6g0496 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 193 IPR013083 -
Lan6g0496 371 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0496 Lan-Chr6 4150340 4152463 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0496 1 319 C3H Transcription Factor Family AT3G03550 42.609 3.11e-69 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0496 - - gmx:100792267 507.679