Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0495 ATGGCTTTAGAAACTCTTCCATCTAATGAGTTTTCCAATTTCACTATCTATGATACTATTTCTGCAACACCATTTAGAAGCTATGACTCTTCAGAGGCTAGTTTCTTATTAGGAGAGAACATAGTTGATTACCATGAACATGACCCTGATGCATTCAGTAACTATGCATTAGGGACACAAAAACGCCAATCCGGTGAACCAAGGCAGAATTTCGCGGCGCAAGGGAGGAAGAAGAGAAGAAGAAAGCCAAGAGTTTGCAAGAACAAGGAAGAAGCTGAAGCTCAAAGAATGTCTCACATTACAGTAGAAAGAAACCGGAGGAAGCAAATGAATGAGCATCTTGCTGTTCTGCGTTCACTCATGCCTGAATCCTATGTCCAAAGGGGTGACCAGGCCTCTATAGTTGGTGGAGCTATAGAATTTGTGAAGGAATTGGAGCATCTCTTGCAATCTCTTGAGGCTCAAAAGTTGCAACTTTTACATCAAAGGGTTGCACAAACCAATGAAGATACAGCCATTTCCAAAATCAACACACCCCCTTTTGCACAATTTTTTGTGTACCCTCAGTATACATGGTCCCAGGCTCCTAACAAATACACATCTCAGACTAAGGTTGGTGCCATAGCTGATATTGAGGTTACTTTGATCGAAACACATGCAAGCATTCGAATTCTATCGCAAAGAAGACTCAGGCAACTATCAAAGTTGGTTGCTGGTTTTCAAACACTCTACCTCACCATTCTTCATCTCAATGTCACAACCATTGACCCATTGGTACTTTATTCTGTCAGTGCTAAGGTTGAAGAAGGATGTCAACTTGGTTCAGTAGATGACATTGCAACAGAAGTTCACCACTTGCTTAGAATAATTGATGAAGAAGCTTCCCTTTGTTGCTGA 897 0.4125 MALETLPSNEFSNFTIYDTISATPFRSYDSSEASFLLGENIVDYHEHDPDAFSNYALGTQKRQSGEPRQNFAAQGRKKRRRKPRVCKNKEEAEAQRMSHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEAQKLQLLHQRVAQTNEDTAISKINTPPFAQFFVYPQYTWSQAPNKYTSQTKVGAIADIEVTLIETHASIRILSQRRLRQLSKLVAGFQTLYLTILHLNVTTIDPLVLYSVSAKVEEGCQLGSVDDIATEVHHLLRIIDEEASLCC* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0495 298 Gene3D - 86 163 IPR036638 GO:0046983
Lan6g0495 298 PANTHER TRANSCRIPTION FACTOR BHLH71 1 297 - -
Lan6g0495 298 MobiDBLite consensus disorder prediction 59 98 - -
Lan6g0495 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 163 IPR036638 GO:0046983
Lan6g0495 298 CDD bHLH_AtFAMA_like 97 156 - -
Lan6g0495 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 94 145 IPR011598 GO:0046983
Lan6g0495 298 Coils Coil 142 169 - -
Lan6g0495 298 SMART finulus 100 151 IPR011598 GO:0046983
Lan6g0495 298 PANTHER MAX DIMERIZATION, MAD 1 297 - -
Lan6g0495 298 Pfam Helix-loop-helix DNA-binding domain 95 146 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0495 Lan-Chr6 4143663 4145303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0495 63 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 54.146 9.71e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan6g0495 HLH 4.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0495 - - pvu:PHAVU_003G284500g 429.869