Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0493 ATGGATCAGACCAGAGATAGCAACGTGGTTCAAATAATCACCGGCGATGAAAACTGGTCCTCCTCCGGCGATCAATCCGTTTGGGCAACCGAAGACGATTACAGATTCTTCAACAACAGCAACGATGCCGAATCAACCCCTAAGAGATCGAGAAACTCGCAGGACGCAACGGCGTCGTCTAGCAATAACCGTTCCAAAGCGATTGGGAAAATGTTCTTCAAGACTAAGCTTTGTTGCAAGTTCCGTGCCGGCACGTGTCCATATGTGACGAACTGCAACTTTGCGCATAGCATAGAGGAGCTGCGGCGGCCACCGATGAACTGGCAGGAGATCGTGGCGGCGCACGAGGAGGAGAAATCGGTGCCCGCGAGGGAGGAGTTTCAGATTCCGTCGCTTTCGGGTTATTCAGGGGAGACACAGAGGTCTTATAAGGGGAGACATTGCAAGAAGTTTTATACCGAGGAAGGGTGCCCCTATGGGGATAGTTGCACTTTTATGCATGACGAGAATTCGAGGAATAGAGAGAGTGTGGCTATTAGTTTGGGACCTGGTGGGTATGGTGGTGGTGGTGGCAGTGGCGCAGGTGTGGGTGGGGGTGCTGGGAGTGGTGGTGGCGGCGGTGGCAGTGGTAGTTTGAATTTGAAGCCATCCAATTGGAAGACGAGGATCTGCAATAAGTGGGAGTTGACAGGGTATTGCCCGTTTGGGAATAAATGTCATTTTGCTCATGGTGCTGCAGAATTGAGCCAACATGGTGGGTTTGTAGATGGAGAAAATAGAGACTCAGCTTCTGCTGGTACTCCTGACACAAAACGTGGAGGAGGACTGTTGAAAACTCTGGCAGATAATGTGGTTGCATCAGTTATTCCAGTTGCTCATTCTGATGTCTATCATATTGGGGTTCCTTCACAAAGGCCATCAGTAGTGATTCAAAGGCCAGGACAGAGAGCTCATCAGAAGTGGAAAGGTCCAGATAAAATAAGTAGGATATATGGTGATTGGATCGATGACATCGAATAG 1020 0.4961 MDQTRDSNVVQIITGDENWSSSGDQSVWATEDDYRFFNNSNDAESTPKRSRNSQDATASSSNNRSKAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHSIEELRRPPMNWQEIVAAHEEEKSVPAREEFQIPSLSGYSGETQRSYKGRHCKKFYTEEGCPYGDSCTFMHDENSRNRESVAISLGPGGYGGGGGSGAGVGGGAGSGGGGGGSGSLNLKPSNWKTRICNKWELTGYCPFGNKCHFAHGAAELSQHGGFVDGENRDSASAGTPDTKRGGGLLKTLADNVVASVIPVAHSDVYHIGVPSQRPSVVIQRPGQRAHQKWKGPDKISRIYGDWIDDIE* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0493 339 SUPERFAMILY CCCH zinc finger 141 170 IPR036855 GO:0046872
Lan6g0493 339 MobiDBLite consensus disorder prediction 1 25 - -
Lan6g0493 339 Gene3D - 135 182 - -
Lan6g0493 339 ProSiteProfiles Zinc finger C3H1-type profile. 72 99 IPR000571 GO:0046872
Lan6g0493 339 SUPERFAMILY CCCH zinc finger 215 249 IPR036855 GO:0046872
Lan6g0493 339 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 14 336 - -
Lan6g0493 339 SUPERFAMILY CCCH zinc finger 70 103 IPR036855 GO:0046872
Lan6g0493 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 73 97 IPR000571 GO:0046872
Lan6g0493 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 219 244 IPR000571 GO:0046872
Lan6g0493 339 Gene3D - 211 251 - -
Lan6g0493 339 Gene3D - 67 103 - -
Lan6g0493 339 PANTHER CCCH ZINC FINGER/TIS11-RELATED 14 336 IPR045877 GO:0003729
Lan6g0493 339 SMART c3hfinal6 218 245 IPR000571 GO:0046872
Lan6g0493 339 SMART c3hfinal6 72 98 IPR000571 GO:0046872
Lan6g0493 339 SMART c3hfinal6 142 169 IPR000571 GO:0046872
Lan6g0493 339 Pfam CCCH-type zinc finger 146 168 IPR041367 -
Lan6g0493 339 ProSiteProfiles Zinc finger C3H1-type profile. 218 246 IPR000571 GO:0046872
Lan6g0493 339 MobiDBLite consensus disorder prediction 38 62 - -
Lan6g0493 339 ProSiteProfiles Zinc finger C3H1-type profile. 142 170 IPR000571 GO:0046872
Lan6g0493 339 MobiDBLite consensus disorder prediction 253 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0493 Lan-Chr6 4131293 4138315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0493 183 248 C3H Transcription Factor Family AT1G68200 36.364 1.98e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan6g0493 zf-CCCH 1.1e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0493 - - lang:109349089 652.129