Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0490 ATGGCCAAAAAGAAAACAAAGGACCCAAAACAAACCCCTCAAACCGACGCCGTTTTACCCCCGACTGGTCTTTTCGGCACTCTCTTCGGTAACGCGGCGGAACAGAGTCCCACCATCGCCGCCGCCGATTCTCTTTTTTCTGATAACAACCCATTTCGAAGAAAGCCTCAACAATATGCTGCAACTTCCGATTCAACCAAACCCACTCAAACCCTCAATGAGGATCCCATTGATGAAAAGAAGAGGAAGCGGAAAGAGGAGAAAAATCTTACTGCTACTGCTGATTCCAATTCCATAGTCGAAGTTTCAGAGAAAAAGAAGGATAAAAAGAAGAAGAAGCAAGCTTCTGATGAAGAGAACACGGGCTCTGACTTGGTTGTGGAACCAAATGTGACAAGCGAGGTTGCGAACGAAGACAATGAGAGAAAGAAGAAAAGGAAGAAGAAGAAACCGGCTTCTGATGACGAGAACAAAAATTCTGACTTGGTTGTGGAACCAATTGAAAATGACGAAGTTGCGAAAGAAGGGGATGAGAAGAAGAAGAGGAAAAGAGAGGATCTTGAAAAAGAATGGGAGGACAAGATGTATGGGATTGTAGAGGGTGAAGAAAAAGTTGAAGGTGAAGGGTTGGAGAAGAAGAAAACTGTTGGGAGCAAGAGGAAGACGGTGGATAATGCAGCTGATATTCTTGTTTCGAAGGAAGGTTTTGACGACGAGGATAAGCTTTTGAGGACTGTTTTTGTTGGGAACTTGCCTCTTAAGGTGAAGAAGAAGACTTTGTTGAAGGAGTTTAAGAAATATGGTGAGATTGAATCTGTGAGGATCCGTTCTGTTCCAATACAAGATACAAAAAAACCCAGGAAGGGAGCTATTCTTGCAAAGAAAATAAACGATGATGGTGATAGTGTTCACGCCTACATTGTTTTCAAAACAGAGGAATCTGCTCAGGCTTCTTTGTCACACAACATGACTGTGGTTGAAGGAAATCACATTCGTGTTGACAGGGCATGCCCACCCCGCAAGAAACTGAAAGGGGAGAAGGCTCTGCTTTATGACAACAAGAGAACAGTTTTCGTGGGCAACCTCCCATTTGATGTGAAGGATGAAGAAATATATCAGTTATTTTGTGGTAAATCCAACCTGGAATCTGATGTAGAAGCTGTAAGAGTTGTTAGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCCTATGTGCTGTTTAAAACTAGGGATGCCGCTAATTTTGTCATTAGGAAACGGAACATGAGGCTTCGAGACCGACAGTTGAGAATATCTCATGCCAAAGCGGACGCCACCCCATCTAAAAGGCCATACCCATCATCACCTGCTGGAGCTGTCAGGACCCCTCCTGCAAAGAAGTTTGCCATGGCTTCAAGGTCTCCTTTAAGCAGTGATAACAGGTCAAACAAGAAAGTTAATACGTCTTATCAGGGTCTGCGCGCTAGCAAACCTGATGTCCAAAAGAGAACTCAGGGGGGAGAAAAACCAAAAGAACGCTTGGTTAAAAGGCCATCGGTTGCTGCTCGGAAGGCTAAAGTAAACTCGCAGAAGGATGGTGCTCCTCCATCAAAACAAGCAGCCGGGGTAAAGCGTAAGTTCGATAAGCGCACTCCGGATAGCTCCCTTCGTCCGAAGAAATTTCAAAAGAACAGGTAG 1677 0.4431 MAKKKTKDPKQTPQTDAVLPPTGLFGTLFGNAAEQSPTIAAADSLFSDNNPFRRKPQQYAATSDSTKPTQTLNEDPIDEKKRKRKEEKNLTATADSNSIVEVSEKKKDKKKKKQASDEENTGSDLVVEPNVTSEVANEDNERKKKRKKKKPASDDENKNSDLVVEPIENDEVAKEGDEKKKRKREDLEKEWEDKMYGIVEGEEKVEGEGLEKKKTVGSKRKTVDNAADILVSKEGFDDEDKLLRTVFVGNLPLKVKKKTLLKEFKKYGEIESVRIRSVPIQDTKKPRKGAILAKKINDDGDSVHAYIVFKTEESAQASLSHNMTVVEGNHIRVDRACPPRKKLKGEKALLYDNKRTVFVGNLPFDVKDEEIYQLFCGKSNLESDVEAVRVVRDPHLNVGKGIAYVLFKTRDAANFVIRKRNMRLRDRQLRISHAKADATPSKRPYPSSPAGAVRTPPAKKFAMASRSPLSSDNRSNKKVNTSYQGLRASKPDVQKRTQGGEKPKERLVKRPSVAARKAKVNSQKDGAPPSKQAAGVKRKFDKRTPDSSLRPKKFQKNR* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0490 558 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 149 556 - -
Lan6g0490 558 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 436 IPR000504 GO:0003723
Lan6g0490 558 MobiDBLite consensus disorder prediction 150 187 - -
Lan6g0490 558 CDD RRM1_RBM34 244 334 IPR034220 -
Lan6g0490 558 SUPERFAMILY RNA-binding domain, RBD 352 449 IPR035979 GO:0003676
Lan6g0490 558 SUPERFAMILY RNA-binding domain, RBD 237 344 IPR035979 GO:0003676
Lan6g0490 558 MobiDBLite consensus disorder prediction 120 134 - -
Lan6g0490 558 MobiDBLite consensus disorder prediction 100 119 - -
Lan6g0490 558 CDD RRM2_RBM34 356 432 IPR034221 -
Lan6g0490 558 PANTHER RNA-BINDING PROTEIN 34 149 556 - -
Lan6g0490 558 Gene3D - 350 442 IPR012677 -
Lan6g0490 558 MobiDBLite consensus disorder prediction 466 488 - -
Lan6g0490 558 MobiDBLite consensus disorder prediction 73 91 - -
Lan6g0490 558 MobiDBLite consensus disorder prediction 535 558 - -
Lan6g0490 558 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 429 IPR000504 GO:0003723
Lan6g0490 558 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 246 288 IPR000504 GO:0003723
Lan6g0490 558 MobiDBLite consensus disorder prediction 1 187 - -
Lan6g0490 558 MobiDBLite consensus disorder prediction 428 558 - -
Lan6g0490 558 MobiDBLite consensus disorder prediction 494 512 - -
Lan6g0490 558 MobiDBLite consensus disorder prediction 29 72 - -
Lan6g0490 558 Gene3D - 240 343 IPR012677 -
Lan6g0490 558 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 338 IPR000504 GO:0003723
Lan6g0490 558 SMART rrm1_1 245 334 IPR000504 GO:0003723
Lan6g0490 558 SMART rrm1_1 356 432 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0490 Lan-Chr6 4095188 4099353 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0490 K14837 - gmx:100784494 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0769 18 13131959 13136429 Lan6g0490 6 4095188 4099353 LSH