Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0488 ATGGGAAGACCACCATGTTGTGACGAGAGTGGTGTAAAGAAAGGGCCATGGACACCAGAAGAAGATGAGAAGCTGACTGATTATATTAACAAACATGGCCAAGGAAGTTGGAGAACACTTGCAAAGCGTGCAGGTCTCAATAGGTGCGGTAAGAGCTGCAGACTAAGGTGGACAAACTATCTGAGGCCTGATATCAAGAGAGGCAAGTTCACTGAAGAAGATGAGAGACTTATCATCAATCTTCATTCAGTTCTGGGAAACAAATGGTCGAAGATTGCATGTCATCTTCCAGGACGAACCGATAATGAAATAAAAAATTTCTGGAACACAAATATAAGGAAAAAACTTCTCCAGATGGGTATTGACCCAGAAACTCACAAGCCAAGGACGGATTTCAATCACCTCATGAATCTTGCAAACTTGATTGGCATGTCAAACTTTGGCAACAATGTTGCTATGAATACATGGAGCAACCCTCTAAGATTACAAGCTGATGTAACTCAGCTTGCCAAACTCCAACAACTTCAAAATATGTTGCAAGTTATGAACAACTCATTTTTTAATATTGGAAACCCTTCCTTCTTAGGAAACCATAGCCTCAACAACCCATTTGATGCAATTCTCAACGGGACTAATATCATGCAAACTACAGAACCTGCTATGTTGAGAAGTCAAGAATATGCAAACCCTGGTTTACTCTCTCAAGCACGCAGTGACTCATCTAAATCATGGACATATGTAGAGGGTGGGTCTAATCCTCAAGAATTTGATTGCAACAAAGTTAGCAGAACCACACTTGAAAATAAAGTAGAAAATCCATTTCCTGCATTAGTTGCTTGCTCTCCAGAGATGGAAACCTTCAACCAAATGGAAAATGGATCTAATACAGCACAAACGTCGATTCAATCACCTTCCAACACATTCTTTGATGATTGGGAGAAGTTCCTGGACAACGAAACAAGCGGGTCCTACTGGAAAGAGATTCTAGACTTGACATCCTCTTCAGGATCGCCAATTTCCTGGTAG 1026 0.4094 MGRPPCCDESGVKKGPWTPEEDEKLTDYINKHGQGSWRTLAKRAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEDERLIINLHSVLGNKWSKIACHLPGRTDNEIKNFWNTNIRKKLLQMGIDPETHKPRTDFNHLMNLANLIGMSNFGNNVAMNTWSNPLRLQADVTQLAKLQQLQNMLQVMNNSFFNIGNPSFLGNHSLNNPFDAILNGTNIMQTTEPAMLRSQEYANPGLLSQARSDSSKSWTYVEGGSNPQEFDCNKVSRTTLENKVENPFPALVACSPEMETFNQMENGSNTAQTSIQSPSNTFFDDWEKFLDNETSGSYWKEILDLTSSSGSPISW* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0488 341 PANTHER MYB TRANSCRIPTION FACTOR 1 332 - -
Lan6g0488 341 CDD SANT 69 112 IPR001005 -
Lan6g0488 341 CDD SANT 16 61 IPR001005 -
Lan6g0488 341 Gene3D - 69 134 - -
Lan6g0488 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan6g0488 341 SMART sant 13 63 IPR001005 -
Lan6g0488 341 SMART sant 66 114 IPR001005 -
Lan6g0488 341 Gene3D - 13 66 - -
Lan6g0488 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 332 - -
Lan6g0488 341 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan6g0488 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan6g0488 341 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan6g0488 341 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan6g0488 341 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lan6g0488 341 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0488 Lan-Chr6 4083200 4085658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0488 1 330 MYB Transcription Factor Family AT5G16770 45.977 1.79e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan6g0488 Myb_DNA-binding 1.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0488 K09422 - gmx:778082 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0771 18 13144468 13146523 Lan6g0488 6 4083200 4085658 LSH