Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0486 ATGAGAGGTAGTAGGAGAGAGCATCGCCCCCATGTTCATCATCATAATCATGATGATAACACATCATCATCATCATCATCTTCCACTTTTCCTTCTCAGCGTAGTAGAGGCGGTGGAAGAAAACAAGGCCATCACCATGGCCATGCTTCACAACCCAAATTACGCTTTGTTAAGAAGTCCGAAATCCTTCCATCTTCTTCTGTTTCAAACTCTGATAACTCTTGTCTCACCGAACAACTTGCCTCCGTAAACATCTCCAACCAAGACAAAGACGATAGAAACAATAATAATCATGTCTCTGATGATGCGTGTTCGAGCAAGACCAAGGAGGAAGGGGATTTTAATGATATGGATGATAACATATTTTCCCTGAGTAGTAGACTTGATAAGTTACTCTCTCGGATGGAACAACCTCAATTGTCCGAGGAACAGCTCAGAGACAATGACATATCCCAGCAAAATGAGTTACTTGTGGTGGAATCAATTTATGGAGAAAACGTTTTCATCCTTGACGCCTGGAAAGACCACCACTGTTTTCAGAAACACCATGAGAGCTTCCTCAAAGAATTGCATCAATGCCAGATTTGCTTTAGTGAATATGCAGGTACTGAGTTTCGGCAGTTACCATGTAAGCATTTTTTTTGCTTGAAATGCTTGCAGACCTTTACTCAGATGCATGTAAAAGAAGGTACCATTAGCAGTCTTCAGTGTCCAGAAGCAAAATGTCCAGTTATGATTCCACCTGGCCTTTTAAAACTCTTGCTTGATGACAATGAGTATGAACGCTGGGAATCCATGATGTTGGAGAAAACACTTGCATCAATGTCTGATGTTGTTTATTGTCCAAGGTGTGAAACACCTTGTATAGAGGATGAAGACCAGCATGCTCAATGCTCAAAATGCTTTTTTAGCTTTTGTACCCTTTGCAGCGAACGGCGTCATGTTGGCATTGTATGCATGACGCTAGATATGAAGCTTCAGATTCTGCAGGACCGTCAAAATTCATCTAACTTAAAGGAAGATCAAAAGCGTAGGGAACGCGAAAAGATCAATGAAATGCTCAGTATGAAAGAAATACATCGTGATTCCAAGTTGTGCCCCTCTTGTGACATGGCAATTTCTCGAACTGAAGGTTGTAACAAAATGGTATGCGGTAATTGTGGAGAATATTTCTGTTACCGCTGCAACAAAGCAATTGATAAATCAGATCCATACGGACATTTCAGGGATGGAGCATGCGAATTGTTCCCACAAGAAATGATTGAGAACTGGCAAGAGCGTATAAATCATCGGCAGGTGGTTGGACAATTACAGGCTGAACTCTTTCCTCAAAGTGGTCGGGCATGTCCTAATTGTCGTCAATTTAATGCGAAGATTGGAAACAATAATCACATCTTTTGCTGGGCATGCCAAAGTCATTACTGCTATTTATGCAACGAGGTTGTCAGGCGTGGTACTAAGCATTATGGACCAAAGGGCTGCAAACAACATTCTGAGGGATAG 1503 0.4158 MRGSRREHRPHVHHHNHDDNTSSSSSSSTFPSQRSRGGGRKQGHHHGHASQPKLRFVKKSEILPSSSVSNSDNSCLTEQLASVNISNQDKDDRNNNNHVSDDACSSKTKEEGDFNDMDDNIFSLSSRLDKLLSRMEQPQLSEEQLRDNDISQQNELLVVESIYGENVFILDAWKDHHCFQKHHESFLKELHQCQICFSEYAGTEFRQLPCKHFFCLKCLQTFTQMHVKEGTISSLQCPEAKCPVMIPPGLLKLLLDDNEYERWESMMLEKTLASMSDVVYCPRCETPCIEDEDQHAQCSKCFFSFCTLCSERRHVGIVCMTLDMKLQILQDRQNSSNLKEDQKRREREKINEMLSMKEIHRDSKLCPSCDMAISRTEGCNKMVCGNCGEYFCYRCNKAIDKSDPYGHFRDGACELFPQEMIENWQERINHRQVVGQLQAELFPQSGRACPNCRQFNAKIGNNNHIFCWACQSHYCYLCNEVVRRGTKHYGPKGCKQHSEG* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0486 500 MobiDBLite consensus disorder prediction 38 53 - -
Lan6g0486 500 Pfam Zinc finger, C3HC4 type (RING finger) 193 238 IPR018957 GO:0046872
Lan6g0486 500 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 182 498 IPR031127 GO:0004842|GO:0016567
Lan6g0486 500 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 136 175 IPR031127 GO:0004842|GO:0016567
Lan6g0486 500 MobiDBLite consensus disorder prediction 91 116 - -
Lan6g0486 500 MobiDBLite consensus disorder prediction 1 57 - -
Lan6g0486 500 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Lan6g0486 500 SUPERFAMILY RING/U-box 261 324 - -
Lan6g0486 500 SUPERFAMILY RING/U-box 352 408 - -
Lan6g0486 500 Gene3D - 336 440 - -
Lan6g0486 500 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 182 498 - -
Lan6g0486 500 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 136 175 - -
Lan6g0486 500 MobiDBLite consensus disorder prediction 21 36 - -
Lan6g0486 500 ProSiteProfiles Zinc finger RING-type profile. 193 241 IPR001841 -
Lan6g0486 500 Pfam IBR domain, a half RING-finger domain 356 399 IPR002867 -
Lan6g0486 500 Pfam IBR domain, a half RING-finger domain 261 319 IPR002867 -
Lan6g0486 500 SMART ring_2 193 240 IPR001841 -
Lan6g0486 500 SMART ring_2 449 478 IPR001841 -
Lan6g0486 500 SMART ring_2 366 395 IPR001841 -
Lan6g0486 500 MobiDBLite consensus disorder prediction 86 116 - -
Lan6g0486 500 SUPERFAMILY RING/U-box 443 497 - -
Lan6g0486 500 SMART ibrneu5 348 413 IPR002867 -
Lan6g0486 500 SMART ibrneu5 261 319 IPR002867 -
Lan6g0486 500 SUPERFAMILY RING/U-box 188 272 - -
Lan6g0486 500 ProSiteProfiles TRIAD supradomain profile. 189 419 IPR044066 -
Lan6g0486 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 276 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0486 192 423 C3H Transcription Factor Family AT2G31770 26.250 1.14e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0486 K11971 - gmx:100500662 617.461