Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0484 ATGAGTTTTCAGGACATTGAGGCTGGGAGGCCATTCGCTTCACGGCGAAGCCTAATCAACGGGAAGCAGGACCCTACACAGGCGGTGGCTTCTGGAATATTCCAGATCAACACCGCTGTCTCCACCTTTCAGAGGCTCGTCAATACCCTCGGTACTCCCAAGGACACCCCCGAACTCCGCGAGAAGCTGCATAAGACGAGATTGCATATTGGACAATTGGTGAAGGATACTTCCGCTAAACTTAAGGAAGCTAGTGAAATTGATCACCATTCTAATGTTAATGCAAACAAGAAGATAGCAGATGCCAAGCTTGCAAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAGCGTCTTTCAGCTGAGAGGGAAACAGCTTATACTCCTTTTGTTCCACAATCAACTCTTTCTTCCAGCGAAGTTGATGTTACTTCTGATAAGCCTCCTGAACAGCGTGCCCTTCTCATGGAATCCAAAAGACAGGAGGTATTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGATGAAAGAGAGCAAGGTATTCAAGAAATCCAGCAACAAATTGGTGAAGTAAATGAGATTTTCAAAGATCTTGCTGTGCTTGTCCACGAGCAAGGAACAATGATCGGCATGCTTGCTTTTGGTGATATTTGGGATTGTGCTTTTAATCGTCATCATTGTGCTTGCTGCTTAGTCAAAGACTCTCAATTCCGTTGTGGATCAAACACATTATATACTTGGGCCACAGATAGGATGCCCCTTGCTGATGATTTCACCGGATTCAATACATGTTGTGGTATTCACACAAGTTTACTGTGA 834 0.4376 MSFQDIEAGRPFASRRSLINGKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKEASEIDHHSNVNANKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTPFVPQSTLSSSEVDVTSDKPPEQRALLMESKRQEVLFLDNEIAFNEAIIDEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIGMLAFGDIWDCAFNRHHCACCLVKDSQFRCGSNTLYTWATDRMPLADDFTGFNTCCGIHTSLL* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0484 277 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 215 - -
Lan6g0484 277 SUPERFAMILY t-snare proteins 23 211 IPR010989 GO:0016020|GO:0016192
Lan6g0484 277 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Lan6g0484 277 PANTHER SYNTAXIN 2 215 IPR045242 -
Lan6g0484 277 Gene3D - 177 216 - -
Lan6g0484 277 SMART SynN_4 14 127 IPR006011 GO:0016020
Lan6g0484 277 Gene3D - 20 133 - -
Lan6g0484 277 CDD SynN 23 137 IPR006011 GO:0016020
Lan6g0484 277 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 176 214 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0484 Lan-Chr6 4039573 4042742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0484 1 214 SNARE and Associated Proteins AT5G46860 79.439 8.64e-119 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0484 - K08488 gmx:547656 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0527 17 4128939 4133340 Lan6g0484 6 4039573 4042742 LSH
Lan18g0775 18 13184765 13188152 Lan6g0484 6 4039573 4042742 LSH