Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0481 ATGGGTGAAGGAAGAGTTCACCTATCCAAGGAAGTTAAAAATGGGTTAGAATATTTGAAGCGTAAAAGGCTTCAGCGAGCTAAATTTGTAACTGGCACCGACACAAGTATTGCAAACATGATGAATAGAAGTGGAGGAGATACTTTGAGAGCTTCGGTATCATGTGGTACTGGATTGCATGGTAATGCAGATCTCTTTTCCAAGCGGAAGGTGCATAAGTTTGATAGAAGTGATCTAGAATGGACTGATAAAATCCCAGAGTGTCCTGTGTATTCCCCAACGAAGGAGGAATTTGAGGATCCTTTGGCTTATTTACAGAAAATAGCACCAGAAGCTTCTAAATATGGTATATGCAAGATTATTTCACCTTTGAGTGCTTGTGTTCCGGCTGGGGTTGTTCTGATGAAGGAGAATGCAGGGTTCAAGTTTACCACAAGAGTGCAGCCACTTCGCCTTGCTGAATGGGATACTGAAGACAAAGTCACGTTTTATATGAGTGGAAGAAATTACACATTCCGTGATTATGAGAAAATGGCGAACAAGGTTTTTGCACGTAGATATTGCAGTGCTGGGTGTCTCCCAGCCACATACTTGGAAAAAGAGTTTTGGAATGAAATCAGTTGTGGGAAGATTCAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCCACTGATCAGCTTGGGATCAGCAAATGGAATTTGAAGAAACTTTCGAGGTTGCCTAAATCAATTTTGCGGCTCTTGGAAATGTCAATTCCGGGGGTAACTGAACCCATGCTATACATTGGAATGCTATTTAGTATGTTTGCTTGGCATGTGGAGGATCATTACTTGTACAGCATTAATTATCAGCATTGTGGAGCATCAAAAACATGGTACGGTGTTCCTGGTAATGCAGCTTTGGCATTTGAAAGGGTGGTGAAAGAACATGTGTATACTAATGATATTTTGTCGAGTGATGGGGAAGATGGAGCCTTTGATGTTCTCTTGGGGAAAACAACACTTTTTCCACCAAATATTTTGATGGAGCATGAAGTCCCGGTGTACAGGGCTGTTCAAAACCCAGGGGAGTTTATAATAACCTTCCCTAGGGCATATCATGCTGGCTTTAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTCTAGGGGCTATTGCTAGTCGTAGATATGCACATCTTAACCGGGTTCCTTTGCTGCCCCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTTCATACATGCTTGGAACTTGAAGATGTTGACTTTCCATCTCCTGACATGTTGTCTCATAATTGCATTAAGATTGCCTTTATCAATTTGATGCGTTTCCAGCATTGTGCATGTTGGTTGCTAAAGAATTCAAGGGCATGTATAAGCGTCTCTTCTCATTCTCATGGCACCATTCTATGTACCCTTTGCAAACGTGATTGTTATATAGCTTATGTTGACTGTAACTGTCACATGCATCCTGTATGTCTACGCCATGATATTGAATCTCTTGACCTCACATGTGGGAGCAAGTACACTCTTTATTTGAGGGAGGATATTTCGGATCTGGAAGCTGCAGCCAAGATATTTGAGCAGGAAGATGGGGCATTGAGTGAGATTAAAAGTGACCACAATCTGTATTCATATCCATTGTCAAATATGTTTCAGAGAGCGGAGGCAAAAGGATACACACCTTACTGTGAACTGAAACTTGATTCTGTTAGTGACTGTTCTGGAAATCTTAAACCAGAAGTAGAACCTCTTGAGAGCTCCTCTACTCCCAAACATGCTATGGGGCATGTTAACTCCGATTTTGGCACTGTTGATTGTGAAGAGTTTAGTGGCAGAATACCCAACAGTAGATGTGAATCTTCGCTATCCCCTGCTCAGTATCATGAAAGCTCGTGCAGACCGTTGGGTGATCTTCATATATTTGACACAAAACCCATTGTTTCTAATGAAAGTGATGATTCTGATTCAGAGGTGTTTAGGGTAAAGCGCCCTTCTTCTCTGAAAGCGGAGAGGAGAAATATGAATGAAGCTATGTCTTCAAAACGTACCGAGCAGCAGGGACTTAAACGATTGAAGAAAGTCCTTCCTGAAGGAAGAAGTAGGCTACCAACTGATTTCAGCAGAACCAATGAATCAAGTAACAAACATAGTCACCCTGTCGGTCATAAAGCTGGTGGTGAAAATTCATCGGGGGGTAGATTTGCAAGGAGTAATGGCATCCCCACATCTATAAGGTATAAGAAGTTATGTAATGAAGATATAAGTAGGCAACGAGATCACCCCATGAAAGAAAGGTTGCAGCAAACTTTGAAAGAACACCAATCCGTTGATATAGGGCCAAAGCGACTTAAAGTCAGAGGCCCTTCATTTTTGGGCTTAGAGAGCAGATCGAACTGA 2442 0.4169 MGEGRVHLSKEVKNGLEYLKRKRLQRAKFVTGTDTSIANMMNRSGGDTLRASVSCGTGLHGNADLFSKRKVHKFDRSDLEWTDKIPECPVYSPTKEEFEDPLAYLQKIAPEASKYGICKIISPLSACVPAGVVLMKENAGFKFTTRVQPLRLAEWDTEDKVTFYMSGRNYTFRDYEKMANKVFARRYCSAGCLPATYLEKEFWNEISCGKIQTVEYACDVDGSAFSSSPTDQLGISKWNLKKLSRLPKSILRLLEMSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYQHCGASKTWYGVPGNAALAFERVVKEHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILMEHEVPVYRAVQNPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYAHLNRVPLLPHEELLCKEAMLLHTCLELEDVDFPSPDMLSHNCIKIAFINLMRFQHCACWLLKNSRACISVSSHSHGTILCTLCKRDCYIAYVDCNCHMHPVCLRHDIESLDLTCGSKYTLYLREDISDLEAAAKIFEQEDGALSEIKSDHNLYSYPLSNMFQRAEAKGYTPYCELKLDSVSDCSGNLKPEVEPLESSSTPKHAMGHVNSDFGTVDCEEFSGRIPNSRCESSLSPAQYHESSCRPLGDLHIFDTKPIVSNESDDSDSEVFRVKRPSSLKAERRNMNEAMSSKRTEQQGLKRLKKVLPEGRSRLPTDFSRTNESSNKHSHPVGHKAGGENSSGGRFARSNGIPTSIRYKKLCNEDISRQRDHPMKERLQQTLKEHQSVDIGPKRLKVRGPSFLGLESRSN* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0481 813 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Lan6g0481 813 MobiDBLite consensus disorder prediction 662 714 - -
Lan6g0481 813 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Lan6g0481 813 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Lan6g0481 813 MobiDBLite consensus disorder prediction 767 795 - -
Lan6g0481 813 SUPERFAMILY Clavaminate synthase-like 166 421 - -
Lan6g0481 813 PANTHER LYSINE-SPECIFIC DEMETHYLASE 30 809 - -
Lan6g0481 813 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Lan6g0481 813 Pfam jmjN domain 89 121 IPR003349 -
Lan6g0481 813 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 30 809 - -
Lan6g0481 813 MobiDBLite consensus disorder prediction 767 813 - -
Lan6g0481 813 Gene3D Cupin 88 435 - -
Lan6g0481 813 MobiDBLite consensus disorder prediction 662 754 - -
Lan6g0481 813 SMART cupin_9 235 405 IPR003347 -
Lan6g0481 813 SMART JmjN_1 87 128 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0481 Lan-Chr6 3999342 4005343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0481 56 548 JUMONJI Transcription Factor Family AT2G34880 31.673 5.44e-64 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lan6g0481 JmjC 1.5e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0481 - - gmx:100798611 1325.84