Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0465 ATGGCAGCTTGCACTGTCTACTCCACACTATCTCTCAAAACAAATTGTTTCATCTCAACCCCATCATCAAAAACACATTATGGTTTCCACCACAAACAAATAGTACTATACACCACAAGCAAGAGACACAACAAGAGAGTTAACAATCCATATGTTATAACATGTGCAGCAAGTGACTCACAAACAGTGGTGATTGGTCTTGCAGCAGATTCAGGATGTGGGAAGAGTACTTTCATGAGGAGGCTAACAAGTGTGTTTGGTGGAACAGCAGAACCACCAAAAGGTGGCAACCCTGATTCCAACACACTCATTAGTGACACCACCACTGTTATATGCTTAGATGATTATCATTCTTTGGATAGAACTGGTAGAAAGGAAAAGGGTGTCACTGCACTTGACCCAAGAGCCAATGATTTTGATCTCATGTATGAACAAGTTAAGGCTATTAAGGATGGAATTTCTGTTCAAAAACCAATTTACAACCATGTCACTGGTCTCTTGGATCCTCCTGAACTCATTAAACCACCTAAAATCTTAGTCATTGAAGGTTTGCACCCAATGTATGATGCTCGGGTCAGAGATCTCTTGGACTTCAGCATCTACTTGGACATTAGCAATGAAGTCAAATTCGCTTGGAAAATTCAGAGAGACATGGCAGAACGTGGACACAGTCTTGAAAGCATCAAGGCTAGCATTGAAGCAAGGAAGCCTGATTTTGATGCTTATATTGATCCACAAAAGCAATATGCAGATGCAGTTATAGAAGTGTTGCCAACTGAACTAATTCCAGATGACAATGAAGGGAAGATTTTAAGAGTGAGGTTGATACAGAAAGAAGGGGTTAAGAATTTTAGCCCAGTTTACTTGTTTGATGATGGATCTACCATTTCATGGATACCATGTGGTAGAAAGCTTACATGCTCTTACCCTGGCATCAAATTTGCCTATGGACCAGATGCTTACTATGGAAATGAGGTATCAATTGTGGAAATGGATGGACAATTTGACAGACTAGATGAACTAATATATGTTGAAAGCCACCTAAGCAACCTCTCTTCCAAGTTCTATGGTGAAGTTACTCAACAAATGTTGAAACATGCTGATTTCCCTGGTAGCAACAATGGAACAGGTCTCTTCCAAACCATAGTTGGTTTAAAGATAAGAGAATTATATGAGCAGCTAGTAGCAAGCAGAGCTCAGAGTCCAGTAAAAGCAGCAAAAGCTTAA 1227 0.4002 MAACTVYSTLSLKTNCFISTPSSKTHYGFHHKQIVLYTTSKRHNKRVNNPYVITCAASDSQTVVIGLAADSGCGKSTFMRRLTSVFGGTAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKAIKDGISVQKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTELIPDDNEGKILRVRLIQKEGVKNFSPVYLFDDGSTISWIPCGRKLTCSYPGIKFAYGPDAYYGNEVSIVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRELYEQLVASRAQSPVKAAKA* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0465 408 PANTHER PHOSPHORIBULOKINASE 9 408 - -
Lan6g0465 408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 332 IPR027417 -
Lan6g0465 408 ProSitePatterns Phosphoribulokinase signature. 213 226 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lan6g0465 408 Gene3D - 59 297 IPR027417 -
Lan6g0465 408 Pfam Phosphoribulokinase / Uridine kinase family 64 262 IPR006083 GO:0005524|GO:0016301
Lan6g0465 408 PRINTS Phosphoribulokinase family signature 69 86 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lan6g0465 408 PRINTS Phosphoribulokinase family signature 178 196 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lan6g0465 408 PRINTS Phosphoribulokinase family signature 213 230 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lan6g0465 408 PRINTS Phosphoribulokinase family signature 231 254 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lan6g0465 408 CDD PRK 64 352 - -
Lan6g0465 408 PANTHER URIDINE KINASE 9 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0465 Lan-Chr6 3860714 3863950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0465 116 290 PRT Gene Family AT3G27440 26.404 1.44e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0465 K00855 - gmx:100807126 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0799 18 13423613 13430646 Lan6g0465 6 3860714 3863950 LSH