Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0419 ATGCCGAAAGCAAGTTCTGATGCCAAGCCCGCTGATAATCTGTTGAAGCGCAAGGGCGCTGGAACCGGGAGGAAGCAAAAGAAGAAAGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGCGCTTTCTTCGTTTTCATGGCTGAGTTCAGGGAACAGTTTAAAAAGGAGAATCCAAACAACAAATCTGTCGCCGCTGTTGGTAAAGCTTGTGGTAGCAAATGGAAAGCAATGACTGATGCAGACAAAGCTCCATACATCGCTAAGGCAGAGAAGAAAAAAGAGGAGTATGAGAAGACTCTTCGTGCCTACACTACTGGATTGGCTACCGGCAAAGATGGAGAGGAGTCTGACAAGTCGAAGTCTGAAGTGAATGATGATGAGGATGAAGATGATGAGTAG 405 0.4667 MPKASSDAKPADNLLKRKGAGTGRKQKKKAAKDPNKPKRPPSAFFVFMAEFREQFKKENPNNKSVAAVGKACGSKWKAMTDADKAPYIAKAEKKKEEYEKTLRAYTTGLATGKDGEESDKSKSEVNDDEDEDDE* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0419 134 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Lan6g0419 134 MobiDBLite consensus disorder prediction 106 134 - -
Lan6g0419 134 SMART hmgende2 36 107 IPR009071 -
Lan6g0419 134 Pfam HMG (high mobility group) box 37 105 IPR009071 -
Lan6g0419 134 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 134 IPR031061 -
Lan6g0419 134 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 134 - -
Lan6g0419 134 Coils Coil 88 108 - -
Lan6g0419 134 CDD HMGB-UBF_HMG-box 37 88 - -
Lan6g0419 134 MobiDBLite consensus disorder prediction 1 44 - -
Lan6g0419 134 SUPERFAMILY HMG-box 24 106 IPR036910 -
Lan6g0419 134 MobiDBLite consensus disorder prediction 20 34 - -
Lan6g0419 134 Gene3D High mobility group box domain 21 126 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0419 Lan-Chr6 3345579 3347010 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lan6g0419 HMG_box 9.2e-25 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0419 K25507 - gmx:100499992 135.961