Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0415 ATGTCGTGTTCATCGTCATCGGGATCGGAAGAAGATGATGAGGGATTCGATTCCTACCGGAAAGGAGGCTACCACGCCGTTAGAGTCGCCGATCAATTCGCCGGCGGCAGGTACATAGCGCAGAGGAAGCTTGGTTGGGGTCAATTCTCCACCGTATGGCTTGCTTATGATACCCACTCATCTTCGTATGTTGCTCTCAAGATCCAGAAAAGTGCAGCTGAGTTTGTTCAGGCTGCACTTCATGAGATCAATGTTCTTTCATCAATTGGTGATGGTGGTCCTGCAAATTCGAAGTGTGTTGTCCAATTGATTGAACATTTTAAGCACACAGGCCCAAATGGGCAGCACCTTTGCATGGTCCTTGAGTTTCTTGGTGATAGCTTGCTCCGTTTGATCAAATATAACCGTTACAAAGGCCTTCCATTGAATAAAGTTAAGGAGATTTGCAAGTGCATTTTGATTGGGTTGGATTACCTGCATAGAGAACTTGGTATAATCCACACTGACCTAAAACCTGAAAACATTCTTCTATTTTCAACCATTGATCATTCCAAAGACCCTTGTAGATCTGGACTCTCCCCAATTATAGAGAGGCCTGAGGGAAACATAAACGGTGGAGTTACAAGTCTTATTGAGAAAAGGTTGAAAAGGAGAGCAAGGAGGGCAGTTGCAAAGATATCATTAAGAGATTCATTGGGAGGAGCAGGAGAAGCTCCAAAGTCTGCTAGAAATATCGATGGGATTGATGTGAGATGCAAAATAGTAGATTTCGGAAATGCGTGTTGGGCTGATAAGCCCCTTGCAGAAGAAATACAGACAAGGCAGTACAGAGCTCCCGAAGTTATACTGAAGGCTGGCTATTCTTTTTCTGTTGACATGTGGTCTTTTGCTTGCATAGCATTTGAGCTTGCCACTGGTGATATGTTGTTTACACCCAAGGGTGGTGGACAAGGTTTTTGTGAGGATGAGGATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGATTGCTATTGCTGGTGCACAATCGAAGGATTTCTTTGACAGACATGGGGACCTGAAAAGGATTAGAAGGCTGAAATTTTGGCCACTTGACAAATTACTCATTGATAGGTACAAGTTCTCAGAGAAAGATGCTCGCGAGTTCTCTGAATTTCTTTTACCACTTTTTGATTTTGCACCCGAGAAGCGACCAACTGCAGAACAATGCCTGCAGCACCCATGGCTGAACTGCTTGGAGTGA 1254 0.4458 MSCSSSSGSEEDDEGFDSYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDTHSSSYVALKIQKSAAEFVQAALHEINVLSSIGDGGPANSKCVVQLIEHFKHTGPNGQHLCMVLEFLGDSLLRLIKYNRYKGLPLNKVKEICKCILIGLDYLHRELGIIHTDLKPENILLFSTIDHSKDPCRSGLSPIIERPEGNINGGVTSLIEKRLKRRARRAVAKISLRDSLGGAGEAPKSARNIDGIDVRCKIVDFGNACWADKPLAEEIQTRQYRAPEVILKAGYSFSVDMWSFACIAFELATGDMLFTPKGGGQGFCEDEDHLALMMELLGKMPRKIAIAGAQSKDFFDRHGDLKRIRRLKFWPLDKLLIDRYKFSEKDAREFSEFLLPLFDFAPEKRPTAEQCLQHPWLNCLE* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0415 417 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g0415 417 Pfam Protein kinase domain 251 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g0415 417 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Lan6g0415 417 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Lan6g0415 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Lan6g0415 417 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 415 - -
Lan6g0415 417 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Lan6g0415 417 CDD STKc_SRPK 27 413 - -
Lan6g0415 417 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 415 - -
Lan6g0415 417 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g0415 417 SUPERFAMILY Protein kinase-like (PK-like) 32 414 IPR011009 -
Lan6g0415 417 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0415 Lan-Chr6 3314597 3318510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0415 4 414 EF-hand Containing Proteins AT5G22840 51.183 8.00e-166 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lan6g0415 Pkinase 7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0415 K08832 - gmx:100784192 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0453 17 3439380 3443719 Lan6g0415 6 3314597 3318510 LSH
Lan18g0866 18 14025171 14029688 Lan6g0415 6 3314597 3318510 LSH
Lan6g0415 6 3314597 3318510 Lan17g1236 17 20674499 20677497 PCT
Lan17g1236 17 20674499 20677497 Lan6g0415 6 3314597 3318510 PCT