Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0411 ATGGCACCAGGGACTGGTTGCATATCTGAGACAAGTACAATGAGTGGTGGTGAGTTTAGCATGGAGGATCAGGATGGTGATACATTGGGAAGTTTGAATCAGAATATTGGAAAACCTCCAAGGGATCACTCTTCTATGCGCCATTGTACCAGCTCTTCATGGCTTCTTGAATCGGAACCCGATATTATGATTATAGGCTTGAAACCAACCAGTGAAGAGAAGTCAGAGTTTTCACCTATATTGAGGTCTGGAAGCTGTTCTGAGAAAGGACCAAAGCAGTACATGGAGGATGAGTTCATCTGTGTCGATATTCTTGGTGATTATGTTGGTCGAGGAACAGACCTTCCTTCTCCAGCAGCATTTTATGGGGTATTTGATGGGCATGGTGGTATTGATGCAGCATCATTTACCAAAAAGAACATCCTTAACTTTATAATTGAAGACTCTCAGTTCCCGTCAGGCATTAAGAAAGCTGTTAAGAATGCATTTGTGAAGGTTGATCACACATTTAAAGATGCTAGTGCTCTTGATAGTTCTTCGGGGACCACTGCTCTCACAGCCCTTGTATTGGGAAGGGGCATGCTAATTGCCAATATTGGAGATTCTCGTGCCGTATTAGGCAAAAGGGGAAGAGCTATTGAACTTTCTAAAGACCATAAACCAAATTGCACTTCAGAAAGATTAAGAATTGAGAAACTAGGTGGTGTCATTTATGATGGATACCTGAATGGCCAACTATCAGTGGCTCGTGCTCTTGGAGATTGGCACATCAAAGGTTCTAAAGGTTCTAAAAGTCCTTTAAGCTCAGAGCCAGACTTGGAAGAGATTTCTTTGACAGAAGAAGATGAATTTTTGATTATAGGGTGTGATGGATTATGGGATGTGATGAGTAGTCAATGTGCTGTTACAATGGTAAGGAGAGAACTCATGCAGCATAATGATCCTACAACATGTGCAAAGGCACTCGTGACCGAGGCGCTTCAGCGCAATACATGCGACAATCTAACAGTTGTGGTGGTTTGTTTCTCCAAAGATCCACCTCCTAAGATTGAAATCCCAAGATCACATAGGAGGAGGAGTATTTCAGCTGAAGGCCTTGATCTTCTCAAAGGTGTCTTAAATGGTAGATGA 1131 0.4235 MAPGTGCISETSTMSGGEFSMEDQDGDTLGSLNQNIGKPPRDHSSMRHCTSSSWLLESEPDIMIIGLKPTSEEKSEFSPILRSGSCSEKGPKQYMEDEFICVDILGDYVGRGTDLPSPAAFYGVFDGHGGIDAASFTKKNILNFIIEDSQFPSGIKKAVKNAFVKVDHTFKDASALDSSSGTTALTALVLGRGMLIANIGDSRAVLGKRGRAIELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGSKGSKSPLSSEPDLEEISLTEEDEFLIIGCDGLWDVMSSQCAVTMVRRELMQHNDPTTCAKALVTEALQRNTCDNLTVVVVCFSKDPPPKIEIPRSHRRRSISAEGLDLLKGVLNGR* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0411 376 ProSitePatterns PPM-type phosphatase domain signature. 121 129 IPR000222 GO:0043169
Lan6g0411 376 MobiDBLite consensus disorder prediction 1 47 - -
Lan6g0411 376 CDD PP2Cc 82 342 IPR001932 -
Lan6g0411 376 SMART PP2C_SIG_2 81 342 IPR001932 -
Lan6g0411 376 ProSiteProfiles PPM-type phosphatase domain profile. 82 342 IPR001932 -
Lan6g0411 376 MobiDBLite consensus disorder prediction 1 19 - -
Lan6g0411 376 PANTHER PROTEIN PHOSPHATASE 2C 1 364 IPR015655 GO:0004722|GO:0006470
Lan6g0411 376 MobiDBLite consensus disorder prediction 26 47 - -
Lan6g0411 376 SMART PP2C_4 72 340 IPR001932 -
Lan6g0411 376 Pfam Protein phosphatase 2C 83 334 IPR001932 -
Lan6g0411 376 Gene3D - 67 346 IPR036457 -
Lan6g0411 376 PANTHER PROTEIN PHOSPHATASE 2C 47-RELATED 1 364 - -
Lan6g0411 376 SUPERFAMILY PP2C-like 75 343 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0411 Lan-Chr6 3296237 3299765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0411 65 374 PP2C-type Phosphatase Gene Family AT3G51470 76.774 1.50e-177 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0411 K14803 - gmx:100786416 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0454 17 3445370 3448732 Lan6g0411 6 3296237 3299765 LSH
Lan18g0863 18 14009606 14016502 Lan6g0411 6 3296237 3299765 LSH