Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0410 ATGATTGAACTTTGGCTCTTGGTACTGATGGTTCTTTCCAATGGATTCTCTTCAACTGGGGCTGGCATGCATAATTCCAGTATACCTGACTCTGTAAATATTGGGGCTCTTTTCTCTTTCAATACCACTGTTGGTAGAATGGTAAAACTTGCGATAGAAGCTGCTATTGAAGATGTAAATTCTGATCCGTCTATTCTTGGTAACACTAAGCTGAATATCTCATTGCAAGAAGATTCTAAATACCAAGGTTTTTTGAGCATTTCTGAGGTATTGCAGGTCATGGCAAGGCACACAGTGGCAATAATTGGCCCTCAGACCTCTACAACAGCCCATGTCATAACACATATTGCAAACGAGCTCCAAGTTCCGCTGCTGTCATTTTCAGCTAATGACCCTACCCTTTCTTCACTTCAATTCCCATTCTTCATCAGAACTGGTCCTAATGATCTTTATCTAATGACTGCAATAGCAGACTTTGTTAACTATAATGGGTGGAAAGATGTTATTGCTGTATATGTTGATGATGACAATGGGAGGAATGGAATCAGTGCATTAAGCGATAAGCTTTCTGAGAGACGTTGCAAGATCTCATATAAAGCACCTATGAGCCCTGGAGCAACTCGGGAGGAAATTACTGATTTGCTTGTTCAGGTGGCTCTAGCCGAATCACGAATTATAGTTGTTCACACAAATACCAATTGGGGGCCCAAGGTGTTTAGTGTAGCAAAGTATCTTGGGATGATGGGAACTGGGTATGTTTGGATAGCCACTGGTTTTCTCTCTGCTATTATTGACATAGGTAGTCCCCTCTCTTCAGATGTAATGGATGAAATTCAAGGAGTTATTACACTACGTATGTACACACCAGATTCCGAGCTCAAAAGAAGGTTTGTTTCTAGGTGGAAAAATCTGGCTGCAGACAATAAAGGCGATAGCCCTCTTGGATTGAGTCCTTTGGGTCTCTATGCATATGATACTGTTTATGTACTTGCTCGTGCCCTTGATACGTTTTTCAAACAAGGGAACTCAATCACATTCTCAAGTGATCCGAAGTTATCTATACTACATGGAGACAACTTGCATCTTGATGCCTTGAAAATCTTTAATGAAGGAATATTGTTATGTAAAAGTATTTATGATATTAACATCAATGGTGTATCAGGTCAATTCAAGTATACATCCGGTGGAGACCTTGTAAATCCCGCTTATGAAATCATCAATGTGATTGGAACAGGGTCCAGGAGGATTGGTTATTGGTCTAATCACTCTGGATTATCAGTTGTTCCACCAGAAGCTCTTTATTCGAAACCAGCCAATCATTTCAATTCAAGCCAAAAGCTACTCCCTGTGATTTGGCCAGGAGACACAACCCAGAAACCCCGTGGTTGGGTTTTTCCAAACAATGGAAGGGTCTTAAGAATTGGAGTACCAAAAAGGGTTAGTTACCAAGAATTTGCAACACAAATACAAGGGACTGATTCCTTCAAGGGATTCTGCATTGATGTGTTTCTTTCTGCAGTGAACTTGCTGCCATATGCTGTCCCCTATAAGTTTATCCCATATGGGGATGGTCAAAACAATCCTAGTGACACTGAGCTTGTCCGTTTGATCACAACGGGTGAATTTGATGGAGCGATAGGTGACATTACAATTACAACAAAAAGAACAAAGATGGCGGATTTTACTCAGCCATTTATGGAGACTGGTCTGGTGGTAGTAGCAGCAGTGAGGCAGTCAGACTCCAATGCTTGGGCTTTTTTAGCCCCATTTACACCAACAATGTGGTCTGTCACAGCTAGCTTTTTCATATTCATGGGAGCTGTTATTTGGATTTTGGAGCATAGGGTGAATGATGATTTTAGGGGACCTCCCAAAAAGCAATTAGTTACTGTTTTATGGTTTAGTTTTTCAACTATGTTCTTTGCCCATAGGGAAAATACAGTAAGCACACTTGGTCGCTTCGTGCTCCTTATATGGTTATTTGTAGTTCTGATAATTAACTCAAGTTACACGGCAAGCCTAACGTCAATCCTCACAGTGCAACAACTTTCTTCACCTATTAAAGGCATTGAAAGTTTAATGAATAGCAAAGAGCCTATTGGGTATGTGCAGGGTTCTTTTGTTAAAAGCTATTTAGTTCAGGAAATTGGTATTGATGCATCCAGGCTGGTCCCTCTAAAAACACCTGAAGAATCTTCAGAAGCACTTAAAAAGGGTCCCCAAAATGGTGGTGTTGCTGCATACATTGACGAGCGTGCTTACATAGAGCTCTTTCTTTCAACCCGGTGTGATTTTACTATTGTAGGTCCAGAGTTCACTAGAAATGGTTGGGGATTTGCTTTTCCACGAGACTCGCCATTAGCAGTCGACCTGTCAACAGCCATTTTGCAACTATCAGAGAATGGAGATTTACAAAGGATCCATGATAAATGGCTTTTGAGTCGCGCTTGCTTATCACAGGGTGCAAAGCTTGAAGTAGAAAGACTCAACCTTAGAAGCTTTTGGGGTCTTTATCTAATCTGTGGGCTTTCCTGCTTACTTGCCCTCTCCATTCATCTTATTCAGATAATGAGACAGTATAGTAAGCACCATTCAGAGGAACTTGAGGCTACTAACCAAAGCTCAGGATCAGGATCTTATCGTCTTCGAACTTTCGTTTCATTCATGGATGAAAAAGAAGAGACCGTTAAGAATCGGTCCAAGAGAAGACAAATGGAGAGGATCTCAAACAGAAGCAATGAGGGTGGATCATCCATCAACTCCAATAATGGATATGCTTCTTCTACCAGAAGTGGTTTTCCTAATGAAACCTGA 2814 0.4101 MIELWLLVLMVLSNGFSSTGAGMHNSSIPDSVNIGALFSFNTTVGRMVKLAIEAAIEDVNSDPSILGNTKLNISLQEDSKYQGFLSISEVLQVMARHTVAIIGPQTSTTAHVITHIANELQVPLLSFSANDPTLSSLQFPFFIRTGPNDLYLMTAIADFVNYNGWKDVIAVYVDDDNGRNGISALSDKLSERRCKISYKAPMSPGATREEITDLLVQVALAESRIIVVHTNTNWGPKVFSVAKYLGMMGTGYVWIATGFLSAIIDIGSPLSSDVMDEIQGVITLRMYTPDSELKRRFVSRWKNLAADNKGDSPLGLSPLGLYAYDTVYVLARALDTFFKQGNSITFSSDPKLSILHGDNLHLDALKIFNEGILLCKSIYDININGVSGQFKYTSGGDLVNPAYEIINVIGTGSRRIGYWSNHSGLSVVPPEALYSKPANHFNSSQKLLPVIWPGDTTQKPRGWVFPNNGRVLRIGVPKRVSYQEFATQIQGTDSFKGFCIDVFLSAVNLLPYAVPYKFIPYGDGQNNPSDTELVRLITTGEFDGAIGDITITTKRTKMADFTQPFMETGLVVVAAVRQSDSNAWAFLAPFTPTMWSVTASFFIFMGAVIWILEHRVNDDFRGPPKKQLVTVLWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLMNSKEPIGYVQGSFVKSYLVQEIGIDASRLVPLKTPEESSEALKKGPQNGGVAAYIDERAYIELFLSTRCDFTIVGPEFTRNGWGFAFPRDSPLAVDLSTAILQLSENGDLQRIHDKWLLSRACLSQGAKLEVERLNLRSFWGLYLICGLSCLLALSIHLIQIMRQYSKHHSEELEATNQSSGSGSYRLRTFVSFMDEKEETVKNRSKRRQMERISNRSNEGGSSINSNNGYASSTRSGFPNET* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0410 937 CDD GluR_Plant 470 812 - -
Lan6g0410 937 MobiDBLite consensus disorder prediction 910 937 - -
Lan6g0410 937 PIRSF IGluLR_plant 1 934 IPR017103 -
Lan6g0410 937 Gene3D - 148 425 - -
Lan6g0410 937 SUPERFAMILY Periplasmic binding protein-like I 26 464 IPR028082 -
Lan6g0410 937 Pfam Ligand-gated ion channel 813 844 IPR001320 GO:0015276|GO:0016020
Lan6g0410 937 MobiDBLite consensus disorder prediction 893 937 - -
Lan6g0410 937 SMART GluR_14 471 814 IPR001320 GO:0015276|GO:0016020
Lan6g0410 937 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Lan6g0410 937 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 106 134 - -
Lan6g0410 937 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 323 335 - -
Lan6g0410 937 PANTHER GLUTAMATE RECEPTOR 11 929 - -
Lan6g0410 937 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Lan6g0410 937 SUPERFAMILY Periplasmic binding protein-like II 447 814 - -
Lan6g0410 937 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 929 - -
Lan6g0410 937 Gene3D - 467 582 - -
Lan6g0410 937 Pfam Receptor family ligand binding region 48 410 IPR001828 -
Lan6g0410 937 Gene3D - 753 819 - -
Lan6g0410 937 Pfam Bacterial extracellular solute-binding proteins, family 3 531 812 IPR001638 -
Lan6g0410 937 Gene3D - 583 712 - -
Lan6g0410 937 MobiDBLite consensus disorder prediction 893 909 - -
Lan6g0410 937 Gene3D - 50 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0410 Lan-Chr6 3290733 3295195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0410 5 909 Ion Channels AT3G51480 58.720 0.0 1125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0410 K05387 - gmx:100793320 1437.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0078 18 581174 586628 Lan6g0410 6 3290733 3295195 LSH
Lan6g0410 6 3290733 3295195 Lan18g0078 18 581174 586628 PCT
Lan6g0410 6 3290733 3295195 Lan17g1235 17 20663431 20668696 PCT
Lan18g0078 18 581174 586628 Lan6g0410 6 3290733 3295195 PCT
Lan17g1235 17 20663431 20668696 Lan6g0410 6 3290733 3295195 PCT