Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0406 ATGACACGCGCTCTTAGATTTCTTACCGATAATGTCACGGCGCTGGCAGAGGCTGCGCCGCCGCCGGAGCCGAGAGAATTGGAATCCGATTTCGTTGTCATCCTGGCAGCGCTTCTATGCGCCTTAATATGCGTCGTGGGATTAATCGCCGTCGCACGGTGCGCGTGGCTCCGGCGAGCTACCGGCGTTGGGAGCTTGCCGGCGCACTCTCAGGCGAACAAAGGGCTGAAGAAGAAGGTGCTGCAATCGCTTCCGAAGTTCGCTTACGTGGACAGTAACTCGAGCACGTGGCTGGCGACGCCGGAATGCGCGATTTGCCTGTCGGAGTTTGCCTCCGGCGACGAGATTCGGGTGCTGCCGCAGTGTGGGCACGGGTTCCACGTGGGATGCATAGACACGTGGCTTGGGTCCCACTCTTCATGCCCAACCTGCCGACAAGTCCTGGCCGTTTCTAGGTGCCAGAAGTGTGGGCGGTTCCCTGCAGTTGGCGGTGGCGGTGGCGGTGGCAGCACAACTAACTGTGCGACGGTTGATGAACCGGAGCTAAAGTCAAGAGAAGAGAACAATGCATCTGTTAATAATAATAAGGTCGGTGGTAGCAGTTGTAGTAACATGGAGGGACATCAAAGCCATAACGGTAGCAGTAATTTCCTGCCATGA 660 0.5712 MTRALRFLTDNVTALAEAAPPPEPRELESDFVVILAALLCALICVVGLIAVARCAWLRRATGVGSLPAHSQANKGLKKKVLQSLPKFAYVDSNSSTWLATPECAICLSEFASGDEIRVLPQCGHGFHVGCIDTWLGSHSSCPTCRQVLAVSRCQKCGRFPAVGGGGGGGSTTNCATVDEPELKSREENNASVNNNKVGGSSCSNMEGHQSHNGSSNFLP* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0406 219 Pfam Ring finger domain 102 145 IPR001841 -
Lan6g0406 219 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Lan6g0406 219 CDD RING-H2_PA-TM-RING 102 145 - -
Lan6g0406 219 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 168 - -
Lan6g0406 219 SMART ring_2 103 144 IPR001841 -
Lan6g0406 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 150 IPR013083 -
Lan6g0406 219 SUPERFAMILY RING/U-box 81 150 - -
Lan6g0406 219 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0406 Lan-Chr6 3260759 3261827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0406 1 156 C3H Transcription Factor Family AT1G76410 61.585 2.44e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0406 - - gmx:100787383 298.516