Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0399 ATGAGTGATTCAAAAGAAAATGAGGAACGTGGCCAGAGCATGCCCATGGACGTGGAAGAAAGCCACCAGTTGGTTGATGCAGAGGTTCAAATTGAACCCGAAGCACCTACATCTAAAGATGCATTAAATCACGTGGAAACCGGAAAGGAAGAGCCTCTTGCTGAGGATGAAAATGTTAAGGCAGGGAAGGCAGAGCCTCCTGCCGAGGATGAAAATGTGAAGGCAGGGAAGGCAGAGCCTCTCGCCGAGGATGAAAATGTGAAGACAGGGAAGTCAGACCTTCTTGTTGAGGATGAAATTTTGAAGACAGGGAAGGCCAAACCTATTGTGGAGGAAGATATTGTGAAGCCAGGTGAGGCAGAGTCGATTGCCGAGGATGAAAATGTGAATCCAGGGAATACAGAGCCACCTGTCAAGGATAACAGCAAGAAGCCAGTAAAGGCACAAGCACCTACTGATGATAAAAGTGTGAATCCAGGAAAGGTGGAGCCATCTGCTGAGGATGATAGCGAGCAGCCAGTAAAGGTAGAGCTTCCCGTTGAGGATAAAAGTTTGAATGCAGAGAAGGAAGAGCTACCTGTTGAGGAAAATAGTCTGAAACAAGGGAAGCTAGAGGTACCTGCTGAGGATAACCGTGTGGAAGAAGCTGTTTTAGGGAACATTTGTCAACAAGATGTTCAAAATACTCTTCAGTCGGCCCCAGTTGAGTTTGATACTCAGATTTCAAATAAAGTTGAGTGTGAAAAATCTTCTAATGCGAAGACGAAAGCTGATGAATTTCCCCAGTGTAATATGGACGTCAAGAATGATGATAGCAGTCGTCGAAATAATGTTGCTGCTGCTGAGACAATGATGGAGGTGAAGCCTGAAGCTCGTGAATTGGTTAATAGTAAAACTTGTGATAATGTGGACATCATAGCCAGTCATAATGAGCCTACTACACCACAATCTGTTCCAACATATACAAAAGCTGAGATCAAGAATGATTTACAAGTTGCAAATAAGGGTGATGAAGAGCAAGCTGTTGAACCTGAAGATAATGGGAACTCAAACTCAACGCAGATATCCTTCTTGAACGCTGACCATTGTTATGATGGTAATGAGTCAGGAACAGATGAGGAGCAATCAAATTTTATGAAGGAGCTTGAAAACTTCTTTAGGGAAAGGAGCATGGAATTCAAACCTCCCAAATTTTATGGAGAAGGACTCAACTGCCTTAAGTTATGGAGAGCTGTGATAAGATTGGGTGGCTATGATAAGGTAACCTCATGTAAGTTATGGCGGCAAGTTGGAGAGTCTTTCAAACCTCCAAAGACATGTACCACAGTTTCATGGACTTTTCGGGGATTTTATGAGAAGGCGCTTCTTGATTACGAAAGGCATAAAATACAAGTTGGGGAGTTGAATGTGCCTATTGCTGCTACTTCTCTCCCAGAGCCTGTGATTATTGAAAATCAGGCTTCAGCGTCAGGTAGAGCACGGAGAGACGCTGCAGCACGGGCTATGCAGGGTTGGCACTCACGTCTCCTTGGCAACGGAGAAGTTAGTGACCCTATTATTAATGATAGGAATTCCGGGTCTACACAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTACTTAAACGTAAGAAACCTTCTTACATGGAAAATGCAGTCAAAGCGGTTAGAAGTAAACCATCTAAACCACAATTGGACACAACTGTGGTTGATGTTGGACCTTCTGCTGATTGGGTAAAAATCAACGTGCAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGACTTCTGCGGGAAGAGGTGCGTGTTCAGTCAGACCCAGCAGGACGGTTGGTCATAAGTGGCGAGCCTGAGAATCCCAATAATCCTTGGGGTGTGACACCATTCAAAAAGGTTGTCAGCTTGCCCTCAAGAATTGATCCTCACCAGACATCTGCTGTAGTGACGCTGCATGGACAGTTGTTTGTTCGCGTCCCGTTCGAGCAAGCAGAATAG 2004 0.4416 MSDSKENEERGQSMPMDVEESHQLVDAEVQIEPEAPTSKDALNHVETGKEEPLAEDENVKAGKAEPPAEDENVKAGKAEPLAEDENVKTGKSDLLVEDEILKTGKAKPIVEEDIVKPGEAESIAEDENVNPGNTEPPVKDNSKKPVKAQAPTDDKSVNPGKVEPSAEDDSEQPVKVELPVEDKSLNAEKEELPVEENSLKQGKLEVPAEDNRVEEAVLGNICQQDVQNTLQSAPVEFDTQISNKVECEKSSNAKTKADEFPQCNMDVKNDDSSRRNNVAAAETMMEVKPEARELVNSKTCDNVDIIASHNEPTTPQSVPTYTKAEIKNDLQVANKGDEEQAVEPEDNGNSNSTQISFLNADHCYDGNESGTDEEQSNFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVIRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIQVGELNVPIAATSLPEPVIIENQASASGRARRDAAARAMQGWHSRLLGNGEVSDPIINDRNSGSTQKREKQLKSINLLKRKKPSYMENAVKAVRSKPSKPQLDTTVVDVGPSADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPENPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQAE* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0399 667 CDD ARID 374 459 - -
Lan6g0399 667 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 567 667 IPR002068 -
Lan6g0399 667 MobiDBLite consensus disorder prediction 104 206 - -
Lan6g0399 667 Pfam Hsp20/alpha crystallin family 584 665 IPR002068 -
Lan6g0399 667 Pfam ARID/BRIGHT DNA binding domain 375 459 IPR001606 GO:0003677
Lan6g0399 667 MobiDBLite consensus disorder prediction 104 123 - -
Lan6g0399 667 MobiDBLite consensus disorder prediction 160 206 - -
Lan6g0399 667 MobiDBLite consensus disorder prediction 335 354 - -
Lan6g0399 667 SUPERFAMILY ARID-like 367 471 IPR036431 GO:0003677
Lan6g0399 667 MobiDBLite consensus disorder prediction 1 92 - -
Lan6g0399 667 Gene3D - 372 469 IPR036431 GO:0003677
Lan6g0399 667 ProSiteProfiles ARID domain profile. 372 463 IPR001606 GO:0003677
Lan6g0399 667 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 144 666 IPR045147 GO:0006357
Lan6g0399 667 SUPERFAMILY HSP20-like chaperones 575 663 IPR008978 -
Lan6g0399 667 SMART ARID_2 369 459 - -
Lan6g0399 667 CDD ACD_sHsps_p23-like 586 662 - -
Lan6g0399 667 MobiDBLite consensus disorder prediction 1 27 - -
Lan6g0399 667 SMART bright_3 373 464 IPR001606 GO:0003677
Lan6g0399 667 Gene3D - 557 667 IPR008978 -
Lan6g0399 667 MobiDBLite consensus disorder prediction 43 92 - -
Lan6g0399 667 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 144 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0399 Lan-Chr6 3194449 3201908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0399 335 665 ARID Transcription Factor Family AT1G76510 61.607 1.66e-128 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lan6g0399 HSP20 1.7e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0399 - - lang:109348972 1324.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0463 17 3517321 3524094 Lan6g0399 6 3194449 3201908 LSH