Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0393 ATGCCAGTAAACTGCATAGCACCAAAACCACAATATTCTAATAGTAGTAGTCACTCATTGGAAGACCCACCAGATCAGACTGAGCCCCATAATCCTAGTGTCTTTGCCACTATGTACCCCATAACTTTGAAGTTTGAGGAATTGGTATACAAAGTTAAACTAGAGCATAAAGGGCTATGTTGGGGCAGCACGGGGACCTGCAAAGAGAAGACGATATTGAATGGGATGTCAGGTGTGGTATGCCCAGGAGAAATACTGGCTATGCTGGGGCCATCAGGTAGTGGCAAGACCACACTTCTTACGGCTCTCGGAGGCCGACTCGGAGGAAAAATATCAGGAAAGATCACATACAATAATCAGCCTTTCTCAGGTTCCATAAAGAGAAGAACGGGTTTTGTGGCTCAGGATGATGTGCTATACCCTCATCTCACAGTCACTGAAACTCTAGTCTTCACTGCACTTCTAAGGCTTCCTAACAGCTTAACAAGGGATGAAAAAGTTCAGCATGTAGAGAGAGTTATTGCTGAGCTAGGACTAACTAGGTGCAGGAGCAGCATGATTGGAGGGCCACTTTTCAGAGGAATATCAGGTGGTGAGAAAAAGAGAGTGAGCATAGGCCAAGAAATGCTCATCAATCCAAGCCTGCTGTTGCTGGATGAGCCTACTTCAGGTTTGGATTCCACCACTGCTCTAAGGATCCTTAGCACAATCAAACGGCTCGCGAGTGGTGGTAGAACTATTATCACAACCATTCATCAACCCTCTAGCCGCCTCTACTATATGTTTGATAAAGTGGTCTTGCTCTCTGAAGGGTGTCCTATATATTATGGTCCTGCTTCAACTGCCTTGGACTATTTTTCATCAGTTGGTTTTTCTACTTGTGTTACTGTCAATCCAGCTGATCTCTTGCTTGATCTTGCCAATGGGATTGCCCCGGATTCCAAGCATGCAACTGAACAAAGCGAGAGCTTGGAACAAGAAAGGAAGGTGGTAAGAGAAGCTCTTATATCAGCTTATGACAAAAACATAGCTACAAGGTTGAAAGCTGAGCTTTGCAGCCAGAAGGTGAACAATAACAATATCACAAAGGATTCTTTCACAAGGAATCAGGTCAAACATGAGCAATGGTGCACAAGCTGGTGGCATCAGTTCAAAGTACTATTACAAAGGGGAGTGAGGGAACGAAGGCATGAAGCCTTCAACAAGCTTAGAATATTCCAAGTCATAAGTGTAGCTTTTCTTGGTGGACTTTTGTGGTGGCATACACCAGAATCACACATTCAAGACCGGGTGGCATTGATATTTTTCTTCTCAGTTTTCTGGGGATTCTACCCTCTCTACAATGCAGTTTTCACATTTCCTCAAGAGAGGAGAATGCTGATCAAGGAACGGTCATCGGGAATGTATCGCCTTTCATCGTACTTTCTAGCTAGAACAATAGGAGACTTGCCACTCGAGCTTGCACTTCCAACAGCATTTGTCTGCATAATCTATTGGATGGGAGGGCTTAAACCTGATCCTGTGACTTTTATCCTTTCACTTCTTGTGGTTCTTTACAGTGTTGTTGTCTCTCAAAGTCTTGGCTTAGCATTTGGTGCCATCTTGATGGAGATTAAACAGGCAACTACTCTAGCTTCTGTGACAACCTTTGTATTTCTCATTGCTGGAGGATACTATATACAGCAGATTCCTCCATTCATTGTTTGGCTCAAGTATTTGAGCTACAGCTACTACTGTTACAAGCTACTTCTTGGTGTCCAATACAATGAAAATGATTACTATGAGTGCTCAGAGGGGGTATTATGCAAGGTTGTAGATTTTCCACCAATAAAATCAATGGGTTTGAATCATATGTGGGTTGATGTGTCCATTATGGCACTGATGTTGGTTGGTTATCGACTAGTTGCTTATTTAGCACTGCGTAGAGTGAGGTAG 1935 0.4336 MPVNCIAPKPQYSNSSSHSLEDPPDQTEPHNPSVFATMYPITLKFEELVYKVKLEHKGLCWGSTGTCKEKTILNGMSGVVCPGEILAMLGPSGSGKTTLLTALGGRLGGKISGKITYNNQPFSGSIKRRTGFVAQDDVLYPHLTVTETLVFTALLRLPNSLTRDEKVQHVERVIAELGLTRCRSSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTALRILSTIKRLASGGRTIITTIHQPSSRLYYMFDKVVLLSEGCPIYYGPASTALDYFSSVGFSTCVTVNPADLLLDLANGIAPDSKHATEQSESLEQERKVVREALISAYDKNIATRLKAELCSQKVNNNNITKDSFTRNQVKHEQWCTSWWHQFKVLLQRGVRERRHEAFNKLRIFQVISVAFLGGLLWWHTPESHIQDRVALIFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVCIIYWMGGLKPDPVTFILSLLVVLYSVVVSQSLGLAFGAILMEIKQATTLASVTTFVFLIAGGYYIQQIPPFIVWLKYLSYSYYCYKLLLGVQYNENDYYECSEGVLCKVVDFPPIKSMGLNHMWVDVSIMALMLVGYRLVAYLALRRVR* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0393 644 SMART AAA_5 82 272 IPR003593 -
Lan6g0393 644 CDD ABCG_EPDR 40 277 - -
Lan6g0393 644 Pfam ABC-2 type transporter 383 588 IPR013525 GO:0016020|GO:0140359
Lan6g0393 644 ProSitePatterns ABC transporters family signature. 195 209 IPR017871 GO:0005524
Lan6g0393 644 Gene3D - 56 289 IPR027417 -
Lan6g0393 644 MobiDBLite consensus disorder prediction 8 22 - -
Lan6g0393 644 Pfam ABC transporter 73 223 IPR003439 GO:0005524
Lan6g0393 644 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 295 IPR003439 GO:0005524
Lan6g0393 644 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 33 642 - -
Lan6g0393 644 Pfam ABC-2 type transporter 252 323 IPR043926 GO:0140359
Lan6g0393 644 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 33 642 - -
Lan6g0393 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 287 IPR027417 -
Lan6g0393 644 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0393 Lan-Chr6 3151732 3155039 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0393 72 271 Calmodulin-binding Proteins AT2G36910 29.858 1.07e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0393 K05681 - gmx:100794774 1117.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0471 17 3600032 3602886 Lan6g0393 6 3151732 3155039 LSH