Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0373 ATGATGGGTGGTGGTGGAGACGGCGGCGACCACCAACATGGAGAGTTGAAGGCGGAGATAGCCACTCATCCTCTGTATGAGCAGGTTCTAGCTGCACATGTGGCATGTCTCCGAGTTGCAACTCCAATAGATCAGTTACCACTCATTGATGCTCAGTTATCTCAGTCTCATCATCTTCTTCGCTCTTATTTCTCTCAACAAACTCATTCTCTTTCACCACTTAATCGCCAACACCTTCATAACTTCCTGGCACAATATTTGATAGTGTTGTGTACTTTCAAAGAACAGCTTCAGCAACATGTCAGAGTTCACGCCGTCGAGGCTGTAATGGCTTGCCGTGACATTGAAAATACTTTACAAGCTCTAACAGGTGTGAGTTTGGGAGAAGGAAGTGGGGCGGCAATGTCAGATGATGATGAAGATGAATTGGTGATGGATTTGAGTTTAGATGATTCTCATGACATTATGGGATTTGGACTTCCTACAGAATCTGAAAGGTCACTTATGGAAAGAGTCCGCCAGGAACTCAAGATTGACCTCAAGCAGGGTTTTAAGTCAAAAATTGAAGATGTTAGAGAGGAAATAATGAGGAAACGAAGAGCTGGGAAATTACCAGGTGACACAACTTCTGTGTTAAAGAACTGGTGGCAGCAACATGCCAACTGGCCCTACCCTACTGAAGATGACAAGGCAAAACTTGTTGAAGAGACAGGGTTGCAGCTGAAGCAAATCAACAATTGGTTCATCAACCAAAGGAAACGTAACTGGCATAGCAACTCTCAATCTGTCACCTCTTTGAAGTCTAAGCGCAAGAGGTAG 819 0.4432 MMGGGGDGGDHQHGELKAEIATHPLYEQVLAAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYFSQQTHSLSPLNRQHLHNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGAAMSDDDEDELVMDLSLDDSHDIMGFGLPTESERSLMERVRQELKIDLKQGFKSKIEDVREEIMRKRRAGKLPGDTTSVLKNWWQQHANWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0373 272 Pfam KNOX1 domain 16 57 IPR005540 GO:0003677|GO:0005634
Lan6g0373 272 Pfam Homeobox KN domain 215 254 IPR008422 GO:0003677|GO:0006355
Lan6g0373 272 SMART KNOX2_2 69 124 IPR005541 GO:0003677|GO:0005634
Lan6g0373 272 ProSiteProfiles ELK domain profile. 175 195 IPR005539 GO:0003677
Lan6g0373 272 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 11 272 - -
Lan6g0373 272 SMART KNOX1_2 14 58 IPR005540 GO:0003677|GO:0005634
Lan6g0373 272 Gene3D - 193 268 - -
Lan6g0373 272 ProSiteProfiles 'Homeobox' domain profile. 195 258 IPR001356 GO:0003677
Lan6g0373 272 SUPERFAMILY Homeodomain-like 197 262 IPR009057 -
Lan6g0373 272 SMART HOX_1 197 262 IPR001356 GO:0003677
Lan6g0373 272 CDD homeodomain 198 259 IPR001356 GO:0003677
Lan6g0373 272 Pfam KNOX2 domain 74 123 IPR005541 GO:0003677|GO:0005634
Lan6g0373 272 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 11 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0373 Lan-Chr6 2931657 2935181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0373 1 271 Homeobox Transcription Factor Family AT1G62990 76.224 6.09e-153 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lan6g0373 KNOX2 4.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0373 - - gmx:100787023 471.47