Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0357 ATGGCAGACGAAGCTAAAGCCAAAGGCAACGCCGCTTTCTCTTCCGGCGATTACGCCGCCGCAATCCGTCACTTCTCCGACGCCATCGCTTTATCCCCCACCAACCACGTCCTCTATTCAAACCGATCCGCCGCATACGCTTCCATCCAAAACTACACCGAAGCTTTGACTGACGCTAAGAAAACCGTCGAGCTCAAGGCCGATTGGTCCAAGGGCTACAGCCGCCTCGGCGCCGCTCATATCGGCCTTGGCCAACACAGCGACGCCGTTTCGGCTTACAAGAAGGGACTCGAAATCGACCCTAACAACGACGCCCTGAAATCTGGATTAGCAGATGCCCAGGCCGCCACCGCCGCCGCTACGAGGTCGCGCTCGGCACCCCCTCCATCAGCAAACCCCTTCGGCGATGCTTTCACCGGGCCTGAGATGTGGTCCAAGCTCACCGCTGATGCGACCACTAGGGTTTATCTTCAACAACCTGATTTTGTGAAGATGATGCAGGATATTCAGAAAGATCCAAGTAATTTGAACTTGTACTTGAAGGATCAGAGAGTCATGCGAGCTATTGGTGTTTTGCTCAATATCAAGATTCAAACCGCTAACGAGGACTTTGATATTCCTGATGCGGAGGCCGAGGCTTCTTCGCCTTCTCCCTCGCAATCGGAGAGGAAGAGAGCTGCTGAACCTGAGCCTGTTCCTGAGCCGGAACCTCAGCCGGAGCCTATGGAAATACCGGATGAGGAGAAGGAGGCAAAAGAGAAGAAGGCTCAGGCTCAGAAGGAAAAGGAAGCAGGTAATGCTGCCTATAAGAAGAAGGATTTTGATACCGCGATTCAGCATTACTCAAAGGCTTTGGAGTTGGATGATGAGGACATTTCATATCTCACTAACCGTGCTGCTGTTTACCTGGAGATGGGAAAGTATGAGGAATGCATTAAAGACTGTGACAAGGCCGCTGAAAGAGGAAGAGAACTAAGATCAGACTACAAGATGATAGCAAGAGCTTTGACAAGGAAAGGAAATGCCTTAGTCAAACTGGCAAAATCCTCAAAGGATTATGATCGTGCCATTGAGACTTACCAAAAAGCACTTACAGAGCACCGCAACCCAGACACCCTGAAGAAACTGAATGAAGCTGAAAAGGCCAAGAAAGAACTAGAACAGCAGGAGTATTTTGATCCAAAGTTGGCTGACGAGGAAAGAGAAAAAGGGAATGAATTCTTCAAGCAGCAGAAGTATCCTGAGGCTATCAAGCATTACACAGAGTCCTTAAGAAGAAACCCAGATGAGCCTAGGACATACAGCAACAGAGCTGCATGCTACACTAAACTGGGGGCAATGCCTGAAGGTTTAAAGGATGCAGAGAAGTGCATTGAGCTTGATCCTGCCTTCGTGAAGGGTTATACCAGGAAAGGTGCTGTACAGTTTTTCATGAAAGAATATGAGAAGGCTCTGGAAACATATCGAGAGGGGTTGAAACATGACCCTAACAACCAAGAGATGCTTGATGGCATTTCAAGATGTGTACAACAAATTAACAAGGCCAGCAGGGGGGATTTAACTCCTGATGAATTGAAGGAGAGACAGGCCAAGGGAATGCAGGACCCGGAGATACAGAACATTCTCCAAGACCCTGTTATGAGACAGGTATTGGTTGATTTCCAGGAAAATCCCAAGTCTGCACAGGATCATATGAAGAATCCAATGGTGATGAATAAGATCCAAAAGCTTATCAGTGCTGGAATTGTCCAGATGAAATAA 1761 0.4821 MADEAKAKGNAAFSSGDYAAAIRHFSDAIALSPTNHVLYSNRSAAYASIQNYTEALTDAKKTVELKADWSKGYSRLGAAHIGLGQHSDAVSAYKKGLEIDPNNDALKSGLADAQAATAAATRSRSAPPPSANPFGDAFTGPEMWSKLTADATTRVYLQQPDFVKMMQDIQKDPSNLNLYLKDQRVMRAIGVLLNIKIQTANEDFDIPDAEAEASSPSPSQSERKRAAEPEPVPEPEPQPEPMEIPDEEKEAKEKKAQAQKEKEAGNAAYKKKDFDTAIQHYSKALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAAERGRELRSDYKMIARALTRKGNALVKLAKSSKDYDRAIETYQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPKLADEEREKGNEFFKQQKYPEAIKHYTESLRRNPDEPRTYSNRAACYTKLGAMPEGLKDAEKCIELDPAFVKGYTRKGAVQFFMKEYEKALETYREGLKHDPNNQEMLDGISRCVQQINKASRGDLTPDELKERQAKGMQDPEIQNILQDPVMRQVLVDFQENPKSAQDHMKNPMVMNKIQKLISAGIVQMK* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0357 586 Pfam Tetratricopeptide repeat 7 58 - -
Lan6g0357 586 SUPERFAMILY TPR-like 8 510 IPR011990 GO:0005515
Lan6g0357 586 ProSiteProfiles TPR repeat profile. 465 498 IPR019734 GO:0005515
Lan6g0357 586 SMART CBM 535 574 IPR006636 -
Lan6g0357 586 SMART CBM 140 179 IPR006636 -
Lan6g0357 586 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Lan6g0357 586 MobiDBLite consensus disorder prediction 242 267 - -
Lan6g0357 586 Coils Coil 369 389 - -
Lan6g0357 586 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Lan6g0357 586 PANTHER TPR REPEAT CONTAINING PROTEIN 1 585 IPR045248 GO:0006457|GO:0030544|GO:0051879
Lan6g0357 586 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Lan6g0357 586 Pfam TPR repeat 404 445 - -
Lan6g0357 586 Pfam TPR repeat 265 306 - -
Lan6g0357 586 Gene3D Tetratricopeptide repeat domain 396 515 IPR011990 GO:0005515
Lan6g0357 586 MobiDBLite consensus disorder prediction 209 267 - -
Lan6g0357 586 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 585 - -
Lan6g0357 586 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Lan6g0357 586 Gene3D - 516 586 - -
Lan6g0357 586 Coils Coil 244 268 - -
Lan6g0357 586 Pfam Tetratricopeptide repeat 343 365 IPR019734 GO:0005515
Lan6g0357 586 Gene3D Tetratricopeptide repeat domain 255 391 IPR011990 GO:0005515
Lan6g0357 586 ProSiteProfiles TPR repeat profile. 397 430 IPR019734 GO:0005515
Lan6g0357 586 Pfam STI1 domain 141 194 IPR041243 -
Lan6g0357 586 Pfam STI1 domain 527 578 IPR041243 -
Lan6g0357 586 Pfam Tetratricopeptide repeat 466 498 IPR001440 GO:0005515
Lan6g0357 586 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Lan6g0357 586 SMART tpr_5 465 498 IPR019734 GO:0005515
Lan6g0357 586 SMART tpr_5 397 430 IPR019734 GO:0005515
Lan6g0357 586 SMART tpr_5 258 291 IPR019734 GO:0005515
Lan6g0357 586 SMART tpr_5 431 464 IPR019734 GO:0005515
Lan6g0357 586 SMART tpr_5 333 370 IPR019734 GO:0005515
Lan6g0357 586 SMART tpr_5 2 35 IPR019734 GO:0005515
Lan6g0357 586 SMART tpr_5 36 69 IPR019734 GO:0005515
Lan6g0357 586 SMART tpr_5 70 103 IPR019734 GO:0005515
Lan6g0357 586 SMART tpr_5 292 325 IPR019734 GO:0005515
Lan6g0357 586 ProSiteProfiles TPR repeat profile. 258 291 IPR019734 GO:0005515
Lan6g0357 586 MobiDBLite consensus disorder prediction 117 138 - -
Lan6g0357 586 Gene3D - 131 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0357 Lan-Chr6 2771016 2774489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0357 1 99 U-box Gene Family AT3G07370 27.273 1.29e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0357 K09553 - gmx:100816776 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0894 18 14215431 14219268 Lan6g0357 6 2771016 2774489 LSH