Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0343 ATGGAGAGGCACAAATGCAAGCTTTGTTCAAGAACGTTCCCTAATGGCAGAGCATTGGGTGGTCACATGAAGGGTCACTTCGCCATTCTCCCTCTTCCTCCAAAACCACAATCTGTAACTACCCACACTCACTCTGCTTCTTTGTCTTCTTTTGATGATGATGATGATGAAGAAGAAAAGTGTATGATTTATGAGTTGAGAGAGAACCCAAAGAAAAGTTTCAGACTTGCAGATCCTAAATTCTCTTTTCCATCTGATACTAGCTCTGTGGTTCAAGACAGAGAGAGTGAGACCGAGTCAAAGAACCCAACTCGTAAAAGATCCAAAAGAAACAGAAAGTGGAACCAGAATTTGGAACAAAACAAGAAAGGTAAATTGAGTTTGATGGAGTTGTCACCAGTGAGTTCAGTTTCTGAAACATGGCCTGAAGAAGACGTTGCTATGTGTCTCATGATGCTTTCAAGGGACACGTGCAAGAAGAAAAACACTATCGTGGAAGAACAAGAAGAACAAGAACAAGAAGTTGAAGAAGAAAAAGTAAAACCAAAGGGGTTGAATTTGGAAAAGAATAATATGGAGCTGAAGAGGGTTAGTGGGAAGCACAACAATAAGTGTGACAAGTGTGGTAAAACTTTTCGATCTTCTCGTGCATTGGGGAGTCACAAAACTATATGTTCTCGTGATGATGATGATAAAAACAAAATCTTTGAATGCCCATTTTGTTATAAGGTTTTTGGGTCAGGTCAAGCACTTGGTGGTCACAAAAGATCTCATCTCATTCAATCTTCAAATGCTAGTAACCATTCTACTACTACTACTACTACTACTACTAGATTCAAAGACACCTTCATAGATCTCAACTTGCCAGCACAAACAGAAGAAGATAACCTTAGTGTTGTTTCTGATGCTGATTTCATACATTCATCTGCCTAG 933 0.3934 MERHKCKLCSRTFPNGRALGGHMKGHFAILPLPPKPQSVTTHTHSASLSSFDDDDDEEEKCMIYELRENPKKSFRLADPKFSFPSDTSSVVQDRESETESKNPTRKRSKRNRKWNQNLEQNKKGKLSLMELSPVSSVSETWPEEDVAMCLMMLSRDTCKKKNTIVEEQEEQEQEVEEEKVKPKGLNLEKNNMELKRVSGKHNNKCDKCGKTFRSSRALGSHKTICSRDDDDKNKIFECPFCYKVFGSGQALGGHKRSHLIQSSNASNHSTTTTTTTTRFKDTFIDLNLPAQTEEDNLSVVSDADFIHSSA* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0343 310 ProSitePatterns Zinc finger C2H2 type domain signature. 238 258 IPR013087 -
Lan6g0343 310 SMART c2h2final6 236 258 IPR013087 -
Lan6g0343 310 SMART c2h2final6 203 223 IPR013087 -
Lan6g0343 310 SMART c2h2final6 4 26 IPR013087 -
Lan6g0343 310 MobiDBLite consensus disorder prediction 34 54 - -
Lan6g0343 310 MobiDBLite consensus disorder prediction 76 127 - -
Lan6g0343 310 SUPERFAMILY beta-beta-alpha zinc fingers 233 260 IPR036236 -
Lan6g0343 310 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 303 - -
Lan6g0343 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 203 230 IPR013087 -
Lan6g0343 310 SUPERFAMILY beta-beta-alpha zinc fingers 3 223 IPR036236 -
Lan6g0343 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Lan6g0343 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 236 263 IPR013087 -
Lan6g0343 310 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 303 IPR044303 GO:0006355
Lan6g0343 310 Coils Coil 158 181 - -
Lan6g0343 310 Gene3D Classic Zinc Finger 202 258 - -
Lan6g0343 310 Pfam C2H2-type zinc finger 236 260 - -
Lan6g0343 310 Pfam C2H2-type zinc finger 3 26 - -
Lan6g0343 310 Pfam C2H2-type zinc finger 204 222 - -
Lan6g0343 310 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0343 Lan-Chr6 2644202 2645534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0343 1 300 C2H2 Transcription Factor Family AT3G60580 36.474 7.40e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan6g0343 zf-C2H2_6 8e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0343 - - lang:109348901 597.045