Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0325 ATGACTTCTTCATCTGCAAATCAACTTATTTCTATTAGTCCTGATGAGCTCAGGTTCCATTTTGAGCTGGACAAGCAAACATTTTGTGATCTTAAAGTTGCAAATAACACAGAGAGCTATGTTGCTTTCAAGGTCAAAACCACTTCACCGAAGAAGTACTTTGTACGACCGAACACTGGTCTTATACAGCCCTGGGACTCTTGTATCATCAGAGTAACCCTCCAAGCCCAGCATGAATACCCTCCAGACATGCAGTGCAAAGACAAGTTTCTCTTGCAGAGTACTGTAGTGAATTCAAATACTGATGTTGATGAGCTCCCACCAGATACTTTTACTAAGGAAAGTGGAAATACAATAGAGGAGATGAAACTAAGAGTTGCATATATCTCTCCTAATTCACCCCAAGGAAGCTCTGAAGATGACGTATTGAAGAACTCATCGCAAAAATTTGACGCCTCTTCCGATCTTCTTTTTGAAAGCGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAACCATTCTCATGAGGCATCCTAGCTACATAGCTCGTGAAGAAGAGTCTGAGGCTAGCTCTCTTTCCATTGATAATAAACAATGTGCAGTGAATAATGCATATTTATATCCCGGTGCCATTCTTATGCATAATGATTCCAGTGGTATGAACTTCTCATCTCAGGGAGTTGAGAAGGTTAGGAAAACTACTGGCCAGGGAATGCAGCAGGAGCAACTTAGAAGGGAGAACTCTCAGCTTGAAAGAGAACAAATCCTTGGGGGTCATGATTCACCGCTGCGCTTAATAGATTTAAATGATGTAGTAAACTATGAGGAGTTCTTGAAAAACTTGACGGATGCAGAGCAACAGCAACTACTGAAGTTTCTTCCTGTGGTCGATGCTGTCAAACTTCCTGACAGCCTCAAATTCATGTTCAATAGCTCTCAATTCAAGGAGAACTTAACTTATTTTCAGCAGCTTCTTGCTGAAGGTGTCTTTGATATCTCTTTGTCTGGGACAAAACCTGAAGACTGCAAGACTTTGAAAAGGCATGCGTTGTCCAATCTGTCAAAGTCAAAATGGGTAGAACACTATTATTTTCTCAAGATACAGAGATGTAAAACCAGAAGTGGAAAATCTGTTACCTTGGGCTCAAATGGTACAGTATCAAGTTATGTTGCTCACGTCAAGAGAATGTGTGAAAACCAAAATCAAAACTCTCCAGAATTGAAGACAATCATGAGGAGTCCCAAAAGGGTGGTAGCAAAGGCTGGCTATGAGGGAAAGGAAGTTGTAGAAGATGGCTCTCACTACAGTCCCAAAAGCCTATTTGCTTTGCCTCCTGAGGCCAGCTCACTTTTTCTGGATTCTTCAAACTTTGTTGAGGAGAGTTCTGATCAGGATCTGCTACTAGAGGTGCCATCTAATAGTTATTTTCCTGAGGCAGAGCTCCTGCCGCCAACTTTCAGCTTTGGTGCTCAAGCTAGCACTAGTAATAGCTCAGTATACTCACATCTTAATTGA 1518 0.4157 MTSSSANQLISISPDELRFHFELDKQTFCDLKVANNTESYVAFKVKTTSPKKYFVRPNTGLIQPWDSCIIRVTLQAQHEYPPDMQCKDKFLLQSTVVNSNTDVDELPPDTFTKESGNTIEEMKLRVAYISPNSPQGSSEDDVLKNSSQKFDASSDLLFESETPMVSVEIGHGTILMRHPSYIAREEESEASSLSIDNKQCAVNNAYLYPGAILMHNDSSGMNFSSQGVEKVRKTTGQGMQQEQLRRENSQLEREQILGGHDSPLRLIDLNDVVNYEEFLKNLTDAEQQQLLKFLPVVDAVKLPDSLKFMFNSSQFKENLTYFQQLLAEGVFDISLSGTKPEDCKTLKRHALSNLSKSKWVEHYYFLKIQRCKTRSGKSVTLGSNGTVSSYVAHVKRMCENQNQNSPELKTIMRSPKRVVAKAGYEGKEVVEDGSHYSPKSLFALPPEASSLFLDSSNFVEESSDQDLLLEVPSNSYFPEAELLPPTFSFGAQASTSNSSVYSHLN* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0325 505 Pfam MSP (Major sperm protein) domain 10 105 IPR000535 -
Lan6g0325 505 PANTHER OSJNBB0038F03.10 PROTEIN 143 504 IPR044589 -
Lan6g0325 505 SUPERFAMILY PapD-like 5 137 IPR008962 -
Lan6g0325 505 ProSiteProfiles Major sperm protein (MSP) domain profile. 9 129 IPR000535 -
Lan6g0325 505 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 143 504 - -
Lan6g0325 505 Pfam Asx homology domain 249 339 IPR028020 -
Lan6g0325 505 Gene3D Immunoglobulins 2 133 IPR013783 -
Lan6g0325 505 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 260 372 IPR044867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0325 Lan-Chr6 2510506 2521632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0325 155 483 C2C2-Gata Transcription Factor Family AT4G17570 43.917 8.28e-62 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0325 - - gmx:100803914 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0407 17 3009276 3013589 Lan6g0325 6 2510506 2521632 LSH
Lan18g0922 18 14472162 14476495 Lan6g0325 6 2510506 2521632 LSH
Lan6g0982 6 9217518 9222201 Lan6g0325 6 2510506 2521632 PCT
Lan17g0941 17 13027992 13032315 Lan6g0325 6 2510506 2521632 PCT